Evidence map›Paper›PMID 41857500›Full record

ArticleBMC genomic data2026

Complete genome sequence of Streptococcus shenyangsis isolated from buccal mucosa.

Seok Bin Yang, Doyun Ku, Kyu Hwan Kwack, Ji-Hoi Moon, Jae-Hyung Lee

Abstract read
In one paragraph

Article in BMC genomic data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Seok Bin Yang *Department of Oral Microbiology, College of Dentistry, Kyung Hee University, Seoul, 02447, Republic of Korea.
Doyun Ku *Department of Oral Microbiology, College of Dentistry, Kyung Hee University, Seoul, 02447, Republic of Korea.
Kyu Hwan KwackDepartment of Oral Microbiology, College of Dentistry, Kyung Hee University, Seoul, 02447, Republic of Korea.
Ji-Hoi MoonDepartment of Oral Microbiology, College of Dentistry, Kyung Hee University, Seoul, 02447, Republic of Korea. prudence75@khu.ac.kr.
Jae-Hyung LeeDepartment of Oral Microbiology, College of Dentistry, Kyung Hee University, Seoul, 02447, Republic of Korea. jaehlee@khu.ac.kr.

Funding

Korea Basic Science Institute (National research Facilities and Equipment Center) RS-2024-00404660National Research Foundation of Korea (NRF) RS-2025-16066503National Research Foundation of Korea (NRF) RS-2025-20512973
6 · The paper itself

Abstract

objectiveStreptococcus shenyangsis is a recently reported member of the genus Streptococcus, rarely detected in the human oral cavity and for which genomic information remains limited. To broaden our understanding of its genomic diversity and ecological relevance, we sequenced an oral isolate of S. shenyangsis obtained from a healthy Korean adult. DATA DESCRIPTION: Whole-genome sequencing was performed using the PacBio Sequel II platform. The genome of strain KHUD_015 consists of a single circular chromosome of 2,153,473 bp with a G + C content of 40.0% and 99.8% completeness. The strain encodes 1,906 protein-coding genes, four rRNA operons (5 S, 16 S, and 23 S), and 59 tRNAs. Comparative genomic analysis with the type strain D19ᵀ identified 1,506 core and a total of 586 strain-specific clusters across the two genomes. Of these, strain KHUD_015 harbors 349 unique gene clusters comprising 353 genes, mainly assigned to COG categories L (replication, recombination, and repair), K (transcription), and M (cell wall/membrane biogenesis), with additional genes related to V (defense mechanisms) and P (inorganic ion transport and metabolism). This complete genome represents the first oral isolate of S. shenyangsis and provides a valuable reference for future comparative and functional genomic studies investigating the population structure, metabolic potential, and ecological roles of this underexplored streptococcal species.

Indexed as

Genome, BacterialMouth MucosaStreptococcusWhole Genome SequencingBase CompositionHumansBuccal mucosaGenomeStreptococcus shenyangsis

Identifiers

PMID41857500
PMCPMC13123132

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.