Whole-genome resequencing datasets of four Alternaria isolates obtained from carrot seeds.

Yuhan Ma, Feiyun Zhuang, Zhiwei Zhao, Zeyang Liu, Xiangping Yan, Xing Liu, Chenggang Ou

Abstract read

In one paragraph

Article in BMC genomic data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it

0cells of the map it votes in

0citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yuhan MaDepartment of Horticulture, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China.

Feiyun ZhuangState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.

Zhiwei ZhaoState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.

Zeyang LiuJinjiang Ziyuan Agricultural Development Co., Ltd, Quanzhou, 362271, China.

Xiangping YanXining Vegetable Technical Service Center, Xining, 810016, China.

Xing LiuState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. liuxing02@caas.cn.

Chenggang OuState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. ouchenggang@caas.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveCarrot (Daucus carota) is a widely cultivated vegetable crop with high nutritional value. Alternaria is one of the most damaging fungal pathogens to carrots, responsible for diseases such as leaf blight and root rot. However, public genomic resources for carrot-associated Alternaria remain limited, and no genomic data have been reported for seed-transmitted pathogens of this genus to date. This Data Note presents resequencing datasets of four Alternaria isolates obtained from carrot seeds, which will support future research on pathogen diversity and population genetics. DATA DESCRIPTION: We isolated > 20 Alternaria-like isolates from carrot seeds collected from commercial seed production fields in Suzhou District of Jiuquan City and Jinta County of Jiayuguan City, Gansu Province, China (2023–2025; ~7–8 per year), delineated four species based on phenotypic characterization and multilocus sequencing of the ITS rDNA region (primers ITS1/ITS4) and the EF-1α gene (primers EF1-F/EF1-R), and resequenced one representative per species—A. tenuissima (AtD1), A. dauci (AdD3), A. carotiincultae (AcD3), and A. alternata (AaD2)—using paired-end 150-bp sequencing on an Illumina HiSeq/NovaSeq platform. Datasets are available in the NCBI SRA under BioProject PRJNA1344466 ( https://identifiers.org/ncbi/bioproject:PRJNA1344466 ) as four SRA Runs: SRR35781711, SRR35781712, SRR35781713, and SRR35781714.

Indexed as

AlternariaDaucus carotaGenome, FungalSeedsWhole Genome SequencingPhylogenyAlternariaCarrotGenome dataSeed

Identifiers

PMID41857496

DOI10.1186/s12863-026-01415-9

PMCPMC13126878

What OpenQuestion holds

Textmetadata

LicenceCC BY-NC-ND

Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.