Evidence map›Paper›PMID 41857366›Full record

ArticleCommunications biology2026

Microglia cause HIV-induced transcriptional and metabolic changes in human neural organoids.

Pamela E Capendale, Leanne C Helgers, Anoop T Ambikan, Renata Vieira de Sá, Katja C Wolthers, Teunis B H Geijtenbeek, Adithya Sridhar, Ujjwal Neogi, Dasja Pajkrt

Abstract read
In one paragraph

Article in Communications biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Pamela E CapendaleOrganoVIR Labs, Department of Pediatric Infectious Diseases, Emma Children's Hospital, Amsterdam Institute for Reproduction and Development, Amsterdam Institute for Infection and Immunity, Amsterdam UMC, location Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.
Leanne C HelgersDepartment of Experimental Immunology, Amsterdam UMC Location University of Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0003-1200-2225
Anoop T AmbikanThe Systems Virology Lab, Division of Clinical Microbiology, Department of Laboratory Medicine, ANA Futura, Karolinska Institutet, Stockholm, Sweden.
Renata Vieira de SáOrganoVIR Labs, Department of Medical Microbiology, Amsterdam Institute for Infection and Immunity, Amsterdam UMC, location Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-6257-6115
Katja C WolthersOrganoVIR Labs, Department of Medical Microbiology, Amsterdam Institute for Infection and Immunity, Amsterdam UMC, location Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0003-1617-7049
Teunis B H GeijtenbeekDepartment of Experimental Immunology, Amsterdam UMC Location University of Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-5710-2839
Adithya SridharOrganoVIR Labs, Department of Pediatric Infectious Diseases, Emma Children's Hospital, Amsterdam Institute for Reproduction and Development, Amsterdam Institute for Infection and Immunity, Amsterdam UMC, location Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0003-2986-4884
Ujjwal Neogi *The Systems Virology Lab, Division of Clinical Microbiology, Department of Laboratory Medicine, ANA Futura, Karolinska Institutet, Stockholm, Sweden. Ujjwal.neogi@ki.se.ORCID http://orcid.org/0000-0002-0844-3338
Dasja Pajkrt *OrganoVIR Labs, Department of Pediatric Infectious Diseases, Emma Children's Hospital, Amsterdam Institute for Reproduction and Development, Amsterdam Institute for Infection and Immunity, Amsterdam UMC, location Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-5232-8206

Funding

Karolinska Institutet (Karolinska Institute) 2-117/2023Vetenskapsrådet (Swedish Research Council) 2021-01756
6 · The paper itself

Abstract

Human immunodeficiency virus (HIV) can invade the central nervous system during the initial stages of infection and contribute to HIV-associated neurocognitive disorder, affecting up to 50% of people living with HIV (PLWH). To investigate HIV-1-induced immunometabolic changes in the brain, we used a three-dimensional microglia-embedded human neural organoid model. Transcriptomic analysis and genome-scale metabolic modeling revealed that HIV-1 infection led to more pronounced transcriptional changes in the presence of microglia, including upregulation of pro-inflammatory pathways. We identified CCR6, important for HIV-1 permissiveness, to be significantly upregulated upon infection. Metabolic analysis showed increased expression in metabolite transport-related genes, including solute carrier (SLC) genes and altered amino acid metabolism, particularly involving arginine, proline, and tyrosine. These microglia-driven immunometabolic changes may contribute to neuronal dysregulation and, subsequently, neurological complications, which are often observed in PLWH. Early detection of these alterations could support timely therapeutic intervention to improve HIV-related neurologic insult.

Indexed as

HIV-1HIV InfectionsMicrogliaNeuronsOrganoidsBrainGene Expression ProfilingHumansTranscription, GeneticTranscriptome

Identifiers

PMID41857366
PMCPMC13021996

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.