Evidence map›Paper›PMID 41857028›Full record

ArticleScientific data2026

An ontology-based description of nano computed tomography measurements in electronic laboratory notebooks.

F Kirchner, D C F Wieland, S Irvine, S Schimek, J Reimers, R Aversa, A Boubnov, C Lucas, S Flenner, I Greving and 5 more

Abstract read
In one paragraph

Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

F Kirchner *Institute of Metallic Biomaterials, Helmholtz-Zentrum Hereon, Max-Planck-Straße 1, 21502, Geesthacht, Germany. fabian.kirchner@hereon.de.ORCID http://orcid.org/0009-0001-1369-5572
D C F Wieland *Institute of Metallic Biomaterials, Helmholtz-Zentrum Hereon, Max-Planck-Straße 1, 21502, Geesthacht, Germany.
S IrvineInstitute of Materials Physics, Helmholtz-Zentrum Hereon, Max-Planck-Straße 1, 21502, Geesthacht, Germany.
S SchimekInstitute of Metallic Biomaterials, Helmholtz-Zentrum Hereon, Max-Planck-Straße 1, 21502, Geesthacht, Germany.
J ReimersInstitute of Metallic Biomaterials, Helmholtz-Zentrum Hereon, Max-Planck-Straße 1, 21502, Geesthacht, Germany.
R AversaKarlsruhe Institute of Technology, Scientific Computing Center (SCC), Kaiserstraße 12, 76131, Karlsruhe, Germany.ORCID http://orcid.org/0000-0003-2534-0063
A BoubnovKarlsruhe Institute of Technology, Institute of Nanotechnology (INT), Kaiserstraße 12, 76131, Karlsruhe, Germany.
C LucasBruker Daltonics SPR, Falkenried 88, 20251, Hamburg, Germany.
S FlennerInstitute of Materials Physics, Helmholtz-Zentrum Hereon, Max-Planck-Straße 1, 21502, Geesthacht, Germany.
I GrevingInstitute of Materials Physics, Helmholtz-Zentrum Hereon, Max-Planck-Straße 1, 21502, Geesthacht, Germany.
A Lopes MarinhoInstitute of Metallic Biomaterials, Helmholtz-Zentrum Hereon, Max-Planck-Straße 1, 21502, Geesthacht, Germany.
T M WongInstitute of Metallic Biomaterials, Helmholtz-Zentrum Hereon, Max-Planck-Straße 1, 21502, Geesthacht, Germany.
R Willumeit-RömerInstitute of Metallic Biomaterials, Helmholtz-Zentrum Hereon, Max-Planck-Straße 1, 21502, Geesthacht, Germany.
C EschkeInstitute of Metallic Biomaterials, Helmholtz-Zentrum Hereon, Max-Planck-Straße 1, 21502, Geesthacht, Germany. catriona.eschke@hereon.de.
B Zeller-PlumhoffInstitute of Metallic Biomaterials, Helmholtz-Zentrum Hereon, Max-Planck-Straße 1, 21502, Geesthacht, Germany.

Funding

Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 05D23CG1Deutsche Forschungsgemeinschaft (German Research Foundation) 526239533Helmholtz Association JL MDMCHelmholtz Association ZT-I-PF-3-076Helmholtz Association ZT-I-PF-4-027Helmholtz Association ZT-I-PF-4-046
6 · The paper itself

Abstract

Scientific communities have recognized the importance of well-documented metadata generated during research. However, ensuring that metadata is findable, accessible, interoperable, and reusable (FAIR) remains a significant challenge. To address this, scientific communities are working towards making metadata available in semantically annotated knowledge graphs using semantic web technologies. In our proposed solution, the creation of a schema is initiated at the very beginning of the scientific process. This is transformed into a data collection platform using the electronic laboratory notebook framework, Herbie, which facilitates the automatic validation and semantic annotation of metadata. Using the example of synchrotron-radiation-based nano-computed-tomography measurements at a beamline, we demonstrate this approach. It effectively captures the complex metadata of such research instruments along with their various configurations, providing a user-friendly experience. We illustrate how Herbie converts all semantic documents into a user interface, ensuring that the entered data automatically meets all FAIR requirements. Additionally, we show how data can be extracted from the knowledge graph using SPARQL queries.

Identifiers

PMID41857028
PMCPMC13004976

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.