Evidence map›Paper›PMID 41855556›Full record

ArticleJournal of chemical theory and computation2026

ReVesicle: Curation and Equilibration of Lipid Vesicles for Mesoscale Simulations.

Matteo Castelli, Lorenzo Casalino, Rommie E Amaro

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Matteo CastelliDepartment of Molecular Biology, University of California San Diego, La Jolla, San Diego, California 92093, United States.ORCID 0000-0002-3673-0262
Lorenzo CasalinoDepartment of Molecular Biology, University of California San Diego, La Jolla, San Diego, California 92093, United States.ORCID 0000-0003-3581-1148
Rommie E AmaroDepartment of Molecular Biology, University of California San Diego, La Jolla, San Diego, California 92093, United States.ORCID 0000-0002-9275-9553

Funding

Multiscale Computational Microscopy of HIV-1R01AI179188 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Rommie E Amaro · 2023 to 2026
$2.7M
NIAID NIH HHS R01 AI179188
6 · The paper itself

Abstract

Molecular dynamics simulations provide essential atomistic insights into the organization and dynamics of complex biological membranes. However, the equilibration of large-scale, curved lipid assemblies at the all-atom level remains a significant challenge. Standard construction approaches, such as wrapping planar bilayers onto spherical meshes, frequently reverberate into structural instabilities, including membrane holes, infiltrated water, lipid flipping, and nonequilibrated densities, which hinder stable production simulations. Here, we present

Indexed as

Lipid BilayersMolecular Dynamics SimulationWaterLipid BilayersWater

Identifiers

PMID41855556
PMCPMC13085247

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.