ArticleScientific data2026
A near telomere-to-telomere chromosome-level genome assembly of Rhodiola yunnanensis (Crassulaceae).
Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.
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2 citing papers in PubMed.
- Structural Variation and Its Roles in Plant Genomes.Plants (Basel, Switzerland) · 2026Review
- A near telomere-to-telomere chromosome-level genome assembly of Rhodiola yunnanensis (Crassulaceae).Scientific data · 2026Article
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6 authors.
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Abstract
Rhodiola yunnanensis (Crassulaceae) is an endemic medicinal plant species distributed in the Hengduan Mountains of southwestern China. Here, we present a high-quality and near telomere-to-telomere chromosome-level genome assembly of R. yunnanensis generated using Oxford Nanopore long-read sequencing and Hi-C scaffolding. The assembled genome spans 643.28 Mb with a contig N50 of 51.92 Mb, and 98.46% of the sequence was anchored to 11 pseudo-chromosomes, eight of which contained no internal gaps in the current assembly. Benchmark analyses revealed a BUSCO completeness of 97.46%, while the LTR Assembly Index (LAI) score achieved 20.50, both suggesting a high level of assembly quality. Telomeric repeat motifs were detected at both ends of 10 pseudo-chromosomes, and centromeric regions were identified on all 11 chromosomes. We predicted 36,495 protein-coding genes, 94.16% of which were functionally annotated, together with 1,643 transcription factors and 6,429 non-coding RNAs. This high-quality genome provides a valuable resource for studying alpine adaptation, specialized metabolite biosynthesis, and evolutionary diversification in Rhodiola and other high-altitude plants.
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