Evidence map›Paper›PMID 41851065›Full record

ReviewGut microbes2026

Feeding microbes to feed the Gut: inulin reprograms intestinal epithelial metabolism and proliferation through HIF1α.

Raphael R Fagundes, Sean P Colgan

Abstract readReview
In one paragraph

Review in Gut microbes, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Raphael R FagundesDepartment of Cell & Chemical Biology, Leiden University Medical Center (LUMC), Leiden, The Netherlands.ORCID 0000-0003-1571-0374
Sean P ColganDivision of Gastroenterology and Hepatology, Department of Medicine, Mucosal Inflammation Program and University of Colorado, Aurora, CO, USA.ORCID 0000-0003-0431-8887

Funding

ROLE OF EPITHELIA IN ISCHEMIA/REPERFUSION INJURYR01DK050189 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI COLGAN, SEAN P · 2000 to 2024
$5.0M
Mechanisms of Adenosine ProtectionR01DK095491 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI Sean P Colgan · 2012 to 2026
$4.9M
Metabolic Regulation of Inflammation by Microbial SCFAR01DK104713 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI Sean P Colgan · 2015 to 2026
$4.7M
BLRD VA I01 BX002182BLRD VA IK6 BX006475NIDDK NIH HHS R01 DK050189NIDDK NIH HHS R01 DK095491NIDDK NIH HHS R01 DK104713
6 · The paper itself

Abstract

Indigestible dietary fibers shape intestinal mucosal physiology, yet the mechanisms linking fiber-derived microbial activity to epithelial remodeling remain incompletely understood. In their recent study, Ribeiro Castro et al. revealed that the prebiotic inulin induces reprogramming of intestinal epithelial metabolism and proliferation through microbiota-dependent hypoxia and epithelial HIF1α activation. In this commentary, we discuss their findings and highlight the emerging concept that microbial fermentation and oxygen concentrations act as structured physiological signals that guide intestinal epithelial differentiation and crypt-villus dynamics. We further explore how these findings intersect with prior work on SCFA metabolism, butyrate-mediated ISC inhibition, and fructose-driven epithelial growth, and we discuss open questions regarding downstream HIF1α programs, niche accessibility, and immune‒epithelial crosstalk. Understanding how HIF1α calibrates this balance will be essential for safely leveraging prebiotics and microbiome-targeted interventions that promote mucosal health.

Indexed as

Gastrointestinal MicrobiomeHypoxia-Inducible Factor 1, alpha SubunitIntestinal MucosaInulinAnimalsCell ProliferationDietary FiberFermentationHumansPrebioticsDietary FiberHypoxia-Inducible Factor 1, alpha SubunitInulinPrebioticsdietary fiberHIF-1Hypoxiaintestinal epitheliuminulin

Identifiers

PMID41851065
PMCPMC13003842

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.