Evidence map›Paper›PMID 41847035›Full record

ArticlebioRxiv : the preprint server for biology2026

Functional Type I and Type II interferon crosstalk restricts progenitor exhausted CD8 T cells through spatial exclusion and checkpoint enforcement.

Siran Liu, Heidi J Elsaesser, Rene Quevedo, Diala Abd-Rabbo, Bruna C Bertol, Wenxi Xu, Melissa Yi Ran Liu, Sabelo Lukhele, Sara Lamorte, Tracy L McGaha and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Siran LiuDepartment of Immunology, University of Toronto, Toronto, ON, M5S 1A8 Canada.
Heidi J ElsaesserDepartment of Immunology, University of Toronto, Toronto, ON, M5S 1A8 Canada.
Rene QuevedoPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, M5G 2M9 Canada.
Diala Abd-RabboPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, M5G 2M9 Canada.
Bruna C BertolPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, M5G 2M9 Canada.
Wenxi XuPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, M5G 2M9 Canada.
Melissa Yi Ran LiuDepartment of Immunology, University of Toronto, Toronto, ON, M5S 1A8 Canada.
Sabelo LukhelePrincess Margaret Cancer Centre, University Health Network, Toronto, ON, M5G 2M9 Canada.
Sara LamortePrincess Margaret Cancer Centre, University Health Network, Toronto, ON, M5G 2M9 Canada.
Tracy L McGahaDepartment of Immunology, University of Toronto, Toronto, ON, M5S 1A8 Canada.
David G BrooksDepartment of Immunology, University of Toronto, Toronto, ON, M5S 1A8 Canada.

Funding

Mechanisms of Viral PersistenceR01AI085043 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BROOKS, DAVID G · 2010 to 2023
$4.5M
NIAID NIH HHS R01 AI085043
6 · The paper itself

Abstract

Type I interferon (IFN-I) and interferon-γ (IFNγ) are central regulators of antiviral immunity, yet how they cooperatively govern CD8 T cell fate during chronic infection remains unresolved. Here, we uncover a previously unrecognized, spatially encoded interferon circuit that actively constrains progenitor exhausted CD8 T cells (Tpex) during chronic LCMV infection. Persistent IFN-I signaling indirectly restricts Tpex expansion by enforcing their sequestration within PDL1-rich B cell niches of lymphoid tissue and by suppressing T cell-derived IFNγ. Blockade of IFN-I signaling enables Tpex migration into T cell zones of splenic follicles driving IFNγ production, which in turn sustains PDL1 expression on myeloid cells to re-impose local inhibitory pressure. Combined IFN-I and IFNγ blockade disrupts this feedback, promoting coordinated niche redistribution of Tpex and checkpoint remodeling that drives robust Tpex expansion. Single-cell transcriptomics reveal that this layered IFN-I-IFNγ interplay establishes a regulatory balance that constrains Tpex proliferation while preserving effector-like transcriptional programs in their progeny effector CD8 T cells, ultimately preventing premature terminal differentiation. Thus, interferons orchestrate the coordinated T cell-myeloid regulatory circuit that integrates tissue organization, cytokine feedback, and checkpoint control to regulate CD8 T cell exhaustion during chronic infection.

Identifiers

PMID41847035
PMCPMC12991168

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.