Evidence map›Paper›PMID 41840442›Full record

ArticleMicrobiome2026

Differential contributions of an antimicrobial effector from Verticillium dahliae to virulence and tomato microbiota assembly across natural soils.

Wilko Punt, Anton Kraege, Sabine Metzger, Natalie Schmitz, Jinyi Zhu, Stéphane Hacquard, Michael Bonkowski, Nick C Snelders, Bart P H J Thomma

Abstract read
In one paragraph

Article in Microbiome, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Wilko Punt *Institute for Plant Sciences, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, 50674, Germany.
Anton Kraege *Institute for Plant Sciences, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, 50674, Germany.
Sabine MetzgerInstitute for Plant Sciences, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, 50674, Germany.
Natalie SchmitzInstitute for Plant Sciences, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, 50674, Germany.
Jinyi ZhuInstitute for Plant Sciences, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, 50674, Germany.
Stéphane HacquardMax Planck Institute for Plant Breeding Research, Cluster of Excellence on Plant Sciences (CEPLAS), Cologne, 50829, Germany.
Michael BonkowskiInstitute for Zoology, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, 50674, Germany.
Nick C Snelders *Institute for Plant Sciences, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, 50674, Germany.
Bart P H J Thomma *Institute for Plant Sciences, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, 50674, Germany. bthomma@uni-koeln.de.

Funding

Deutsche Forschungsgemeinschaft EXC 2048/1 - Project ID: 390686111.
6 · The paper itself

Abstract

backgroundThroughout their life cycle, plants associate with diverse and complex microbial communities collectively known as their microbiota. These microbiota contribute to plant performance and health by enhancing nutrient acquisition, modulating immunity, and providing a microbial barrier against pathogens. To successfully colonize their hosts, pathogens must overcome not only plant immune defenses but also this microbial barrier. For example, the soil-borne fungal pathogen Verticillium dahliae secretes the antimicrobial effector Ave1 to suppress antagonistic microbes and facilitate infection. Although many plant pathogens, including V. dahliae, inhabit both plant-associated and soil environments, how antimicrobial effectors contribute to pathogen establishment across these diverse ecological contexts remains poorly understood.

resultsTo explore this question, we assembled a collection of natural soils differing in physicochemical properties and microbiota composition. Using three host plant species-barley, tomato, and cotton-we found that root-associated bacterial and fungal communities were primarily shaped by type of soil, whereas phyllosphere microbiota were mainly determined by plant species identity. On tomato, we further observed that the effector Ave1 differentially contributed to V. dahliae virulence depending on the soil of origin. While Ave1 consistently altered tomato-associated microbiota across all soils tested, the specific microbial taxa affected varied between soils.

conclusionsOur findings demonstrate that the impact of the antimicrobial effector Ave1 on microbiota composition and pathogen virulence is context-dependent, influenced by the specific soil-derived microbial community that assembles on the host. This work highlights the ecological complexity of effector functions and suggests that pathogen success in natural environments depends on dynamic interactions with both the plant host and its microbiota. Video Abstract.

Indexed as

AscomycotaMicrobiotaPlant DiseasesSoil MicrobiologySolanum lycopersicumVerticilliumBacteriaGossypiumPlant RootsSoilVirulenceSoil

Identifiers

PMID41840442
PMCPMC13064239

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.