Evidence map›Paper›PMID 41837471›Full record

ArticleChembiochem : a European journal of chemical biology2026

A Modified Methyl Transferase Cofactor to Selectively Silence Gene Expression in Escherichia coli.

Oliver J Irving, Samuel Stone, Robert K Neely, Tim Albrecht

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Oliver J IrvingSchool of Chemistry, University of Birmingham, Birmingham, UK.ORCID https://orcid.org/0000-0001-6617-2436
Samuel StoneSchool of Chemistry, University of Birmingham, Birmingham, UK.
Robert K NeelySchool of Chemistry, University of Birmingham, Birmingham, UK.
Tim AlbrechtSchool of Chemistry, University of Birmingham, Birmingham, UK.ORCID https://orcid.org/0000-0001-6085-3206

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Artificial control of gene expression in bacteria offers interesting prospects for influencing bacterial pathogenicity and antibiotic resistance. We show that the methyl-transferase cofactor, AdoHcy azide, can silence gene expression in modified plasmids in some strains of Escherichia coli, where ampicillin and kanamycin resistance as well as eGFP genes were selectively and independently disabled. The disabling of transcription is likely due to steric inhibition during transcription initiation, which is supported by Sanger and nanopore sequencing results. Both sequencing methods showed that 3-6 nucleotides were absent from around the modification site. Postgrowth, extracted AmpR/eGFP plasmid shows evidence of restriction, with sections of the plasmid, including the modification site, missing for the AdoHcy azide modified plasmids. Notably, the AdoHcy azide modification on the DNA appears to be resistant against demethylation in the BL21 strain of E. coli.

Indexed as

CoenzymesEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialGene SilencingMethyltransferasesGreen Fluorescent ProteinsPlasmidsCoenzymesEscherichia coli ProteinsGreen Fluorescent ProteinsMethyltransferasesantimicrobial resistancegene silencingmethyl transferasesequencingsynthetic cofactor

Identifiers

PMID41837471
PMCPMC12990290

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.