Evidence map›Paper›PMID 41837270›Full record

ArticleNAR genomics and bioinformatics2026

gplasCC: classification and recovery of plasmids from short-read sequencing data for any bacterial species.

Julian A Paganini, Jesse J Kerkvliet, Oscar Jordan, Gijs Teunis, Nienke L Plantinga, Rodrigo Meneses, Rob J L Willems, Sergio Arredondo-Alonso, Anita C Schürch

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In one paragraph

Article in NAR genomics and bioinformatics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Julian A PaganiniDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht 3584CX, The Netherlands.ORCID https://orcid.org/0000-0003-1414-8105
Jesse J KerkvlietDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht 3584CX, The Netherlands.
Oscar JordanDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht 3584CX, The Netherlands.
Gijs TeunisDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht 3584CX, The Netherlands.
Nienke L PlantingaDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht 3584CX, The Netherlands.
Rodrigo MenesesDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht 3584CX, The Netherlands.
Rob J L WillemsDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht 3584CX, The Netherlands.
Sergio Arredondo-AlonsoDepartment of Biostatistics, Faculty of Medicine, University of Oslo, Oslo 0372, Norway.ORCID https://orcid.org/0000-0002-4445-2442
Anita C SchürchDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht 3584CX, The Netherlands.ORCID https://orcid.org/0000-0003-1894-7545

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plasmids play a pivotal role in the spread of antibiotic resistance genes. Accurately reconstructing plasmids often requires long-read sequencing, but bacterial genomic data in publicly accessible repositories have historically been derived from short-read sequencing technology. We recently presented an approach for recovering

Indexed as

BacteriaPlasmidsSequence Analysis, DNASoftwareDatabases, GeneticEnterococcus faecalisEnterococcus faeciumEscherichia coliExtrachromosomal DNAExtrachromosomal DNA

Identifiers

PMID41837270
PMCPMC12988325

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.