Evidence map›Paper›PMID 41836159›Full record

ArticleACS catalysis2025

Discovery of UbiA-Type Cyathane Synthases in Bacteria.

Tyler A Alsup, Diana P Łomowska-Keehner, Melvin Osei Opoku, Zining Li, Caitlin A McCadden, Tracy Qu, Glen Gillia, Jordan Nafie, Jeffrey D Rudolf

Abstract read
In one paragraph

Article in ACS catalysis, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Investigations of the Evolved Molecular Basis for Terpenoid Biosynthesis in Marine Sponges.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tyler A AlsupDepartment of Chemistry, University of Florida, Gainesville, Florida 32611-7011, United States.
Diana P Łomowska-KeehnerDepartment of Chemistry, University of Florida, Gainesville, Florida 32611-7011, United States.
Melvin Osei OpokuDepartment of Chemistry, University of Florida, Gainesville, Florida 32611-7011, United States.
Zining LiDepartment of Chemistry, University of Florida, Gainesville, Florida 32611-7011, United States.
Caitlin A McCaddenDepartment of Chemistry, University of Florida, Gainesville, Florida 32611-7011, United States.
Tracy QuDepartment of Chemistry, University of Florida, Gainesville, Florida 32611-7011, United States.
Glen GilliaDepartment of Chemistry, University of Florida, Gainesville, Florida 32611-7011, United States.
Jordan NafieBioTools, Inc., 5730 Corporate Way, Suite 220, West Palm Beach, Florida 33407, United States.
Jeffrey D RudolfDepartment of Chemistry, University of Florida, Gainesville, Florida 32611-7011, United States.

Funding

Discovery and Biosynthesis of Bacterial TerpenoidsR35GM142574 · NIGMS · UNIVERSITY OF FLORIDA · PI Jeffrey Daniel Rudolf · 2021 to 2026
$2.4M
Chemistry-Biology Interface Training Program at the University of FloridaT32GM136583 · NIGMS · UNIVERSITY OF FLORIDA · PI Chenglong Li · 2020 to 2026
$1.1M
NMR console upgrade for structural biology and metabolomicsS10OD028753 · OD · UNIVERSITY OF FLORIDA · PI LONG, JOANNA R · 2020 to 2020
$600k
Acquisition of a Q Exactive HF Hybrid Quadrupole-OrbitrapS10OD021758 · OD · UNIVERSITY OF FLORIDA · PI BASSO, KARI B · 2017 to 2017
$600k
NIGMS NIH HHS R35 GM142574NIGMS NIH HHS T32 GM136583NIH HHS S10 OD021758NIH HHS S10 OD028753
6 · The paper itself

Abstract

UbiA-type terpene synthases, traditionally annotated as prenyltransferases, have been shown to catalyze terpene cyclization in recent years, expanding their catalytic repertoire beyond primary metabolism. Here, we report on the genome-guided discovery and functional characterization of bacterial UbiA diterpene synthases (diTSs). Using a geranylgeranyl diphosphate (GGPP)-overproducing E. coli system, we screened 32 candidate enzymes and identified five that generate structurally diverse diterpenes, two of which represent bacterial examples of cyathane synthases. Site-directed mutagenesis uncovered active-site residues that influence product formation, directing cyclization towards mono- or tricyclic products. This study expands the known catalytic repertoire of UbiA enzymes and highlights their untapped potential in bacterial terpenoid biosynthesis. Our findings suggest that bacteria may produce diverse and bioactive diterpenoids using UbiA TSs for the first committed biosynthetic step, warranting further exploration of UbiA TSs for natural product discovery.

Indexed as

cyathaneDiterpene synthaseterpenoidUbiAvibrational circular dichroism

Identifiers

PMID41836159
PMCPMC12981382

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.