Evidence map›Paper›PMID 41832370›Full record

ArticleClinical and experimental medicine2026

Single-cell spatial transcriptomics reveals clonal smooth muscle cell heterogeneity and programs associated with atherosclerotic plaque calcification.

Deqiang Kong, Xiaohan Duan, Tianjing Zhang, Qingsong Li, Yiyun Xie, Kang Li, Junye Chen, Yuyao Feng, Xin Liu, Ziqing Deng and 9 more

Abstract read
In one paragraph

Article in Clinical and experimental medicine, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Deqiang Kong *Department of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China.
Xiaohan Duan *Department of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China.
Tianjing Zhang *Department of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China.
Qingsong Li *BGI Research, Beijing, 102601, China.
Yiyun Xie *Department of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China.
Kang LiDepartment of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China.
Junye ChenDepartment of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China.
Yuyao FengDepartment of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China.
Xin LiuBGI Research, Beijing, 102601, China.
Ziqing DengBGI Research, Beijing, 102601, China.
Keqiang ShuDepartment of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China.
Qijian ZhaoDepartment of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China.
Xu ZhangDepartment of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China.
Yuru WangDepartment of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China.
Yanan LiuDepartment of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China.
Zhichao LaiDepartment of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China. laizhichao@pumch.cn.
Yue WangBGI Research, Beijing, 102601, China. wangyue2@genomics.cn.
Jiang ShaoDepartment of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China. esan2002@vip.sina.com.
Bao LiuDepartment of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China. liubao@pumch.cn.

Funding

Beijing Science and Technology Innovation Foundation for University or College students 2024dcxm080National Natural Science Foundation of China 82070498
6 · The paper itself

Abstract

Osteochondrogenic transdifferentiation of vascular smooth muscle cells (SMCs) is a key driver of atherosclerotic calcification. Although SMC phenotypic plasticity has been well described, how clonally related SMCs interact with spatially defined microenvironments to drive calcification remains incompletely understood. We integrated single-cell RNA sequencing, mitochondrial mutation-based lineage tracing, and high-resolution spatial transcriptomics to construct a spatially resolved transcriptomic atlas of human carotid atherosclerotic plaques across AHA stages III-V. Plaque SMCs originated from multiple distinct clones, each capable of differentiating into diverse phenotypes. Pseudotime analysis revealed that fibroblast-like SMCs (FLSMCs), which arose from clones with higher mitochondrial mutation burdens, could transition into multiple SMC subtypes, including osteogenic-like SMCs (OLSMCs). In AHA stage IV-V plaques, OLSMCs were markedly enriched compared with stage III, particularly within peri-calcification zones located 0.16–0.32 mm from calcified regions. Within these niches, OLSMCs and foam macrophages (MPs) showed pronounced spatial enrichment (80–160 µm) and significant co-localization. Mechanistically, SPP1/FN1 signaling from foam MPs activated CD44/integrin pathways in OLSMCs, promoting calcification. These findings indicate that mitochondrial mutation-linked clonal expansion drives osteogenic differentiation within peri-calcification niches. Our data also suggest that the SPP1/FN1-CD44/integrin axis mediates inflammation-driven crosstalk between foam MPs and OLSMCs, providing a foundation for future studies of plaque calcification.

Indexed as

CalcinosisMyocytes, Smooth MusclePlaque, AtheroscleroticCell DifferentiationFoam CellsHumansMuscle, Smooth, VascularOsteogenesisOsteopontinSpatial TranscriptomicsOsteopontinSPP1 protein, humanAtherosclerotic calcificationFoam macrophageOsteogenic-like Smooth muscle cellsSpatial transcriptomeSPP1/FN1-CD44/integrin

Identifiers

PMID41832370
PMCPMC13199203

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.