Evidence map›Paper›PMID 41827754›Full record

ArticleCancers2026

Pharmacologic and Oncohistone Inhibition of SETD2 Converge on Genomic Instability.

Alyssa T Paparella, Ashley G Boice, In Young Park, Rajkishor Nishad, Durga Tripathi, Seth A Nelson, Edward W Pietryk, H Josh Jang, Ian J Frew, W Kimryn Rathmell and 4 more

Abstract read
In one paragraph

Article in Cancers, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Alyssa T PaparellaCenter for Precision Environmental Health, Baylor College of Medicine, Houston, TX 77030, USA.
Ashley G BoiceCenter for Precision Environmental Health, Baylor College of Medicine, Houston, TX 77030, USA.ORCID 0000-0003-1985-1641
In Young ParkCenter for Precision Environmental Health, Baylor College of Medicine, Houston, TX 77030, USA.
Rajkishor NishadCenter for Precision Environmental Health, Baylor College of Medicine, Houston, TX 77030, USA.ORCID 0009-0008-6791-4348
Durga TripathiCenter for Precision Environmental Health, Baylor College of Medicine, Houston, TX 77030, USA.
Seth A NelsonDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI 49503, USA.
Edward W PietrykCenter for Precision Environmental Health, Baylor College of Medicine, Houston, TX 77030, USA.ORCID 0000-0003-1563-0219
H Josh JangDepartment of Cell Biology, Van Andel Institute, Grand Rapids, MI 49503, USA.ORCID 0000-0001-9654-4448
Ian J FrewDepartment of Internal Medicine I, Hematology, Oncology and Stem Cell Transplantation, Faculty of Medicine, Medical Centre, University of Freiburg, 79106 Freiburg, Germany.ORCID 0000-0003-2735-5509
W Kimryn RathmellArthur G. James Cancer Hospital and Comprehensive Cancer Center, The Ohio State University, Columbus, OH 43210, USA.
Frank M MasonDepartment of Medicine, Division of Hematology and Oncology, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Cristian CoarfaDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA.
Ruhee DereCenter for Precision Environmental Health, Baylor College of Medicine, Houston, TX 77030, USA.ORCID 0000-0002-1457-609X
Cheryl Lyn WalkerCenter for Precision Environmental Health, Baylor College of Medicine, Houston, TX 77030, USA.ORCID 0000-0002-4233-3247

Funding

A New Target for Chromatin Remodeler Defects in CancerR35CA231993 · NCI · BAYLOR COLLEGE OF MEDICINE · PI WALKER, CHERYL L. · 2018 to 2024
$6.2M
Convergent Drivers of Tumor Evolution at the Mitotic SpindleR01CA275082 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Ruhee Dere, Frank M Mason · 2022 to 2026
$2.8M
High Memory High-Performance Computer Cluster for Biomedical ResearchS10OD032185 · OD · BAYLOR COLLEGE OF MEDICINE · PI HILSENBECK, SUSAN G. · 2022 to 2022
$596k
Cancer Prevention Research Institute of Texas RP220332GC-CPEH P30ES030285German Research Foundation 419592238Howard Hughes Medical Institute GT16569NCI NIH HHS R01 CA275082NIH HHS R35CA231993NIH HHS S10 OD032185NIH/NCI RO1-CA275082United States Department of Defense KC210123
6 · The paper itself

Abstract

BACKGROUND/

objectivesSETD2 is a dual-function methyltransferase important for methylation of histone H3 at lysine 36 and α-tubulin in spindle microtubules. Genetic inactivation of SETD2 during oncogenesis drives loss of H3K36me3, genomic instability, and cancer progression. This study asked if disruption of genomic stability was a canonical feature of SETD2 inactivation via different pathways.

methodsWe evaluated the impact of EPZ-719, a pharmacologic SETD2 inhibitor, and an H3.3K36M mutant histone ("oncohistone") that binds and sequesters SETD2, on methylation activity and genomic stability in human cell lines. SETD2 activity was measured using

resultsEPZ-719 caused a dose- and time-dependent reduction in SETD2 activity on both histone and tubulin substrates, accompanied by significant increases in chromatin bridges and micronuclei in retinal pigmented epithelial (RPE-1) and 786-O ccRCC cells. Similarly, oncohistone expression markedly decreased SETD2 function, as determined by H3K36me3 levels, and induced comparable mitotic defects in 786-O cells, and aneuploidy in two chondrocyte cell lines expressing the H3.3K36M oncohistone. Combining EPZ-719 with H3.3K36M expression did not exacerbate mitotic defects beyond either oncohistone or pharmacologic inhibition alone, consistent with inhibition of SETD2 as their shared underlying mechanism of action.

conclusionsPharmacologic inhibition and oncohistone-mediated sequestration of SETD2 converge on the induction of mitotic defects, underscoring SETD2's essential role in maintaining genomic stability. Identification of loss of genomic stability as a canonical feature of SETD2 inactivation points to a potential therapeutic liability associated with targeting SETD2 in cancers where it is overexpressed and reveals a mechanism that could contribute to the progression of cancers expressing oncohistone mutations.

Indexed as

chromatin bridgescytoskeletonepigeneticsEPZ-719H3K36Mmethylationmicronucleimicroscopymitosis

Identifiers

PMID41827754
PMCPMC12984950

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.