Evidence map›Paper›PMID 41826141›Full record

ReviewTrends in genetics : TIG2026

Beyond the baseline: mapping the context-specific regulatory landscape of disease.

Yoav Gilad, Alexis Battle

Abstract readReview
In one paragraph

Review in Trends in genetics : TIG, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yoav GiladSection of Genetic Medicine, Department of Medicine, The University of Chicago, Chicago, IL 60637, USA. Electronic address: gilad@uchicago.edu.
Alexis BattleDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.

Funding

Characterizing and Understanding Variation in Gene Regulatory Mechanisms Within and Between Species'R35GM131726 · NIGMS · UNIVERSITY OF CHICAGO · PI Yoav Gilad · 2019 to 2026
$3.7M
Modeling the dynamicimpact of rare and common genetic variation on gene expression anddiseaseR35GM139580 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BATTLE, ALEXIS · 2021 to 2025
$3.1M
Using guided differentiation to predict cancer treatment related cardiotoxicityR01HL172903 · NHLBI · UNIVERSITY OF CHICAGO · PI Yoav Gilad · 2024 to 2026
$2.4M
Statistical Methods for Characterizing Molecular Mechanisms of Human Tissue Development and DiseaseU01HG013843 · NHGRI · NEW YORK GENOME CENTER · PI BATTLE, ALEXIS, GUIGO, RODERIC · 2024 to 2024
$1.8M
NHGRI NIH HHS U01 HG013843NHGRI NIH HHS U01HG013843NHLBI NIH HHS R01 HL172903NIGMS NIH HHS R35 GM131726NIGMS NIH HHS R35 GM139580NIGMS NIH HHS R35GM139580NIH HHS R01HL172903
6 · The paper itself

Abstract

Genome-wide association studies have identified thousands of intergenic variants associated with disease, most of which are presumed to act by affecting gene regulation. Standard expression quantitative trait locus (eQTL) studies were able to link many disease-associated loci to changes in gene expression. Yet, many disease-associated loci show no detectable regulatory effects in baseline bulk gene expression datasets from adult tissues. Recent work shows that, overall, standard eQTLs differ systematically from disease-associated loci, pointing to regulatory effects not captured under baseline conditions. We review emerging evidence that context-specific eQTLs, revealed under environmental perturbations, stress, or developmental transitions, resemble disease loci more closely. We highlight new in vitro systems and machine learning approaches that promise systematic identification of these context-dependent effects.

Indexed as

DiseaseGene Expression RegulationGenetic Predisposition to DiseaseQuantitative Trait LociAnimalsChromosome MappingGenome-Wide Association StudyHumans

Identifiers

PMID41826141
PMCPMC12991421

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.