Evidence map›Paper›PMID 41813847›Full record

ArticleThe EMBO journal2026

The importance of regulated resource reallocation during dynamic environmental shifts in yeast.

Rachel A Kocik, Eli G Cytrynbaum, Jamie M Ahrens, Megan N McClean, Audrey P Gasch

Abstract read
In one paragraph

Article in The EMBO journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rachel A KocikCenter for Genomic Science Innovation, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID http://orcid.org/0000-0003-2422-4538
Eli G CytrynbaumDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID http://orcid.org/0009-0003-3149-3119
Jamie M AhrensCenter for Genomic Science Innovation, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Megan N McCleanCenter for Genomic Science Innovation, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Audrey P GaschCenter for Genomic Science Innovation, University of Wisconsin-Madison, Madison, WI, 53706, USA. agasch@wisc.edu.ORCID http://orcid.org/0000-0002-8182-257X

Funding

Institutional Training in the Genomic SciencesT32HG002760 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI Qiongshi Lu · 2003 to 2026
$17.7M
Elucidating the network design principles of biological signal processingR35GM128873 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Megan N McClean · 2018 to 2026
$4.0M
Wisconsin Nathan Shock CenterP30AG092586 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI Rozalyn M. Anderson, JOHN M DENU · 2025 to 2026
$3.8M
Under-oil open microfluidic system (UOMS) for studying systemic fungal infectionR01AI154940 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI BEEBE, DAVID J, MCCLEAN, MEGAN N · 2021 to 2025
$3.8M
HHS | NIH | National Human Genome Research Institute (NHGRI) T32HG002760HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI154940HHS | NIH | National Institute of General Medical Sciences (NIGMS) R01GM14975HHS | NIH | National Institute of General Medical Sciences (NIGMS) R35GM128873NIA NIH HHS P30 AG092586
6 · The paper itself

Abstract

Many organisms maintain generalized stress responses activated by adverse conditions. A common theme is the induction of stress-defense proteins with reduced production of growth-promoting proteins, including ribosomes. Yet the precise roles of these coupled programs are difficult to dissect. Here, we investigated Saccharomyces cerevisiae responding to salt as a model stressor. We used molecular, genomic, and single-cell microfluidic methods to examine the interplay between transient induction of stress-defense genes and coordinated repression of growth-promoting genes in the yeast environmental stress response (ESR). Loss of transcriptional inducers Msn2/4 accelerates growth during multiple mild stress doses, at the expense of acquired tolerance to subsequent severe stresses. In contrast, loss of Dot6/Tod6 repressors of growth-promoting genes delays stress acclimation, showing that gene repression accommodates the cost of the Msn2/4 response. Msn2/4 bind the DOT6 promoter, influence Dot6 abundance and activation dynamics, and are required for full repression of Dot6 targets and other growth-promoting genes. Thus, Msn2/4 participate in regulating resource reallocation needed to induce their transcripts, underscoring a common theme in stress responses utilized in other organisms.

Indexed as

Gene Expression Regulation, FungalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsStress, PhysiologicalTranscription FactorsDNA-Binding ProteinsPromoter Regions, GeneticDNA-Binding ProteinsMSN2 protein, S cerevisiaeMSN4 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsRegulatory DynamicsResource AllocationStress

Identifiers

PMID41813847
PMCPMC13084002

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.