Evidence map›Paper›PMID 41813722›Full record

ArticleScientific reports2026

Genomic characterization of multidrug-resistant Escherichia coli strains identified from patients with urinary tract infection in Egypt.

Nancy M El Halfawy, Mona K Gouda, Fatma A Elgayar, Alaa Aboelnour Badran

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Article in Scientific reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nancy M El HalfawyDepartment of Botany and Microbiology, Faculty of Science, Alexandria University, Alexandria, Egypt. nancy.elhalfawy@alexu.edu.eg.ORCID http://orcid.org/0000-0002-5687-0158
Mona K GoudaDepartment of Botany and Microbiology, Faculty of Science, Alexandria University, Alexandria, Egypt.
Fatma A ElgayarDepartment of Botany and Microbiology, Faculty of Science, Alexandria University, Alexandria, Egypt.
Alaa Aboelnour BadranDepartment of Clinical Pathology, Faculty of Medicine, Mansoura University, Mansoura, Egypt.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extended-spectrum β-lactamases-producing Escherichia coli (ESBL-EC) pose a serious threat. Moreover, widespread antimicrobial use in Egypt increased the prevalence of antimicrobial resistance (AMR). In this study, whole-genome sequencing (WGS) using the Illumina NovaSeq 6000 was performed on two isolates (UPE7 and UPE139) recovered from participants with urinary tract infections to characterize their resistomes and virulomes. Antibiotic resistance and virulence genes of the two clinical E. coli strains were predicted using computational analysis tools. Several virulence traits and antibiotic resistance genes (ARGs) were identified. Strain UPE7 harbored bla

Indexed as

Drug Resistance, Multiple, BacterialEscherichia coliEscherichia coli InfectionsUrinary Tract InfectionsAnti-Bacterial Agentsbeta-LactamasesEgyptGenome, BacterialGenomicsHumansMicrobial Sensitivity TestsVirulenceVirulence FactorsWhole Genome SequencingAnti-Bacterial Agentsbeta-LactamasesVirulence FactorsEscherichia coliExtended-spectrum β-lactamases (ESBLs)Horizontal gene transfer (HGT)Urinary tract infection (UTI)

Identifiers

PMID41813722
PMCPMC12988205

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.