Evidence map›Paper›PMID 41803149›Full record

ArticleNature communications2026

Phytochrome B integrates jasmonic acid and warm temperature signaling pathways to regulate cotyledon chloroplast development.

Peipei Qi, Junling Huai, Nan Gao, Yuanyuan Yao, Rongcheng Lin

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Peipei Qi *State Key Laboratory of Forage Breeding-by-Design and Utilization, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China.
Junling Huai *State Key Laboratory of Forage Breeding-by-Design and Utilization, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China. huaijl@ibcas.ac.cn.
Nan GaoState Key Laboratory of Forage Breeding-by-Design and Utilization, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China.
Yuanyuan YaoState Key Laboratory of Forage Breeding-by-Design and Utilization, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China.
Rongcheng LinState Key Laboratory of Forage Breeding-by-Design and Utilization, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China. linrongcheng@xhlab.ac.cn.ORCID http://orcid.org/0000-0001-8346-3390

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32270262National Natural Science Foundation of China (National Science Foundation of China) U25A20633, 32030009, 32270262
6 · The paper itself

Abstract

Chloroplast biogenesis and development are coordinated by both endogenous factors and environmental cues. The interplay between jasmonic acid (JA) and temperature in regulating chloroplast development remains poorly understood. Here, we demonstrate that methyl jasmonate (MeJA) and warm temperature (28 °C) treatments additively impair chlorophyll accumulation and chloroplast development in Arabidopsis thaliana cotyledons. We found that the thermosensor phytochrome B (phyB) suppresses, whereas the JA receptor CORONATINE INSENSITIVE 1 (COI1) promotes, MeJA- and warm temperature-mediated chloroplast development. Moreover, phyB directly interacts with JASMONATE ZIM-DOMAIN 1 (JAZ1) and JAZ3, preventing their JA-induced degradation, and warm temperature attenuates this interaction. Strikingly, we reveal that transcription factors ELONGATED HYPOCOTYL 5 (HY5) and MYC2 oppositely regulate cotyledon chloroplast development in response to MeJA and warm temperature by directly and differentially modulating downstream transcriptional networks. Our study establishes a molecular framework in which phyB integrates JA and warm temperature signaling through the HY5-MYCs transcriptional regulatory network to fine-tune chloroplast development, highlighting a plant strategy for ecological adaptation.

Indexed as

ArabidopsisChloroplastsCotyledonCyclopentanesOxylipinsPhytochrome BAcetatesArabidopsis ProteinsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBasic-Leucine Zipper Transcription FactorsChlorophyllGene Expression Regulation, PlantHot TemperatureNuclear ProteinsSignal TransductionTemperatureAcetatesArabidopsis ProteinsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBasic-Leucine Zipper Transcription FactorsChlorophyllCOI1 protein, ArabidopsisCyclopentanesHY5 protein, Arabidopsisjasmonic acidmethyl jasmonateMYC2 protein, ArabidopsisNuclear ProteinsOxylipinsPHYB protein, ArabidopsisPhytochrome B

Identifiers

PMID41803149
PMCPMC13103353

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.