Evidence map›Paper›PMID 41803086›Full record

ArticleNature communications2026

Water mass specific genes dominate the Southern Ocean microbiome.

Emile Faure, Jolann Pommellec, Cyril Noel, Alexandre Cormier, Lisa-Marie Delpech, A Murat Eren, Antonio Fernandez-Guerra, Chiara Vanni, Marion Fourquez, Marie-Noëlle Houssais and 11 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Emile FaureIfremer, BEEP, Univ Brest, Plouzané, France. emile.faure@sb-roscoff.fr.ORCID 0000-0002-9049-2269
Jolann PommellecIfremer, BEEP, Univ Brest, Plouzané, France.
Cyril NoelIFREMER, IRSI - Service de Bioinformatique (SeBiMER) Plouzané, Plouzané, France.ORCID 0000-0002-7139-4073
Alexandre CormierIFREMER, IRSI - Service de Bioinformatique (SeBiMER) Plouzané, Plouzané, France.
Lisa-Marie DelpechIfremer, BEEP, Univ Brest, Plouzané, France.ORCID 0009-0006-0154-0211
A Murat ErenHelmholtz Institute for Functional Marine Biodiversity, Oldenburg, Germany.
Antonio Fernandez-GuerraCentre for Ancient Environmental Genomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0002-8679-490X
Chiara VanniMARUM Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.ORCID 0000-0002-1124-1147
Marion FourquezAustralian Antarctic Program Partnership, Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS, Australia.ORCID 0000-0001-5395-4877
Marie-Noëlle HoussaisLaboratoire d'Océanographie et du Climat (LOCEAN), CNRS-Sorbonne Université, Paris, France.
Ulysse GuyetGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.ORCID 0000-0002-3603-5382
Corinne Da SilvaGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
Frederick GavoryGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
Aude PerdereauGenoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
Karine LabadieGenoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
Patrick WinckerGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.ORCID 0000-0001-7562-3454
Julie PoulainGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
Christel HasslerSwiss Polar Institute, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.ORCID 0000-0002-8976-5469
Yajuan LinDepartment of Life Sciences, Texas A&M University - Corpus Christi, Corpus Christi, TX, USA.ORCID 0000-0002-9057-9321
Nicolas CassarDivision of Earth and Climate Sciences, Nicholas School of the Environment, Duke University, Durham, NC, USA. Nicolas.Cassar@duke.edu.ORCID 0000-0003-0100-3783
Loïs MaignienIfremer, BEEP, Univ Brest, Plouzané, France. lois.maignien@univ-brest.fr.ORCID 0000-0002-5571-5228

Funding

Agence Nationale de la Recherche (French National Research Agency) 18-CE02-0024Agence Nationale de la Recherche (French National Research Agency) ANR-10-INBS-09-08France GénomiqueLaboratoire d’Excellence” LabexMERSwiss National Science Foundation
6 · The paper itself

Abstract

The Southern Ocean (SO) plays a key role in regulating global biogeochemical cycles and climate, yet microbial genes sustaining its biological activity remain poorly characterized. We introduce a microbial genes collection from 218 metagenomes sampled during the Antarctic Circumnavigation Expedition, the majority of which are missing from functional databases. 38% even lack homologs in current reference marine gene catalogs, defining a singular genetic seascape. We show that SO gene assemblages exhibit a common polar signature with the Arctic Ocean while being structured by water masses at the SO-scale. We analyze genomic markers of diverse SO biomes, focusing on dimethylsulphoniopropionate (DMSP) cleavage by polar-adapted bacteria, organic matter consumption in the blooming Mertz polynya and adaptation to polar conditions in the ubiquitous bacteria Pelagibacter. Our work takes a step towards a comprehensive understanding of SO's plankton ecology and evolution, capturing the current state of the unique microbial diversity in this rapidly changing Ocean.

Indexed as

MetagenomeMicrobiotaAntarctic RegionsBacteriaGenes, BacterialOceans and SeasSeawater

Identifiers

PMID41803086
PMCPMC12972064

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.