Evidence map›Paper›PMID 41801331›Full record

ArticleBioprocess and biosystems engineering2026

The effect of nitrogen availability and forms on the degradation pathway of lignocellulose by Bacillus subtilis.

Yanan Yu, Yixin Hao, Yaoxing Zhang, Wenxing He, Nayanci Portal-Gonzalez, Ramon Santos-Bermudez, Wenbo Wang

Abstract read
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In one paragraph

Article in Bioprocess and biosystems engineering, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Yanan YuSchool of Biological Science and Technology, University of Jinan, No. 336, West Road of Nan Xinzhuang, Jinan, 250022, Shandong, People's Republic of China.
Yixin HaoSchool of Biological Science and Technology, University of Jinan, No. 336, West Road of Nan Xinzhuang, Jinan, 250022, Shandong, People's Republic of China.
Yaoxing ZhangSchool of Biological Science and Technology, University of Jinan, No. 336, West Road of Nan Xinzhuang, Jinan, 250022, Shandong, People's Republic of China.
Wenxing HeSchool of Biological Science and Technology, University of Jinan, No. 336, West Road of Nan Xinzhuang, Jinan, 250022, Shandong, People's Republic of China.
Nayanci Portal-GonzalezSchool of Biological Science and Technology, University of Jinan, No. 336, West Road of Nan Xinzhuang, Jinan, 250022, Shandong, People's Republic of China.
Ramon Santos-BermudezSchool of Biological Science and Technology, University of Jinan, No. 336, West Road of Nan Xinzhuang, Jinan, 250022, Shandong, People's Republic of China.
Wenbo WangSchool of Biological Science and Technology, University of Jinan, No. 336, West Road of Nan Xinzhuang, Jinan, 250022, Shandong, People's Republic of China. bio_wangwb@ujn.edu.cn.

Funding

National Natural Science Foundation of China 32201546Natural Science Foundation of Shandong Province ZR2022QC138
6 · The paper itself

Abstract

Nitrogen availability and forms significantly influence the efficiency of microbial lignocellulose degradation. Using Bacillus subtilis LP-10, a strain with strong lignocellulose-degrading capacity, as a model, we evaluated the effects of three concentration gradients inorganic nitrogen sources (NaNO₃, NH₄Cl, NH₄NO₃) on lignocellulose degradation pathway. By conducting a 30-day microcosm experiment simulating the decomposition of Larch needle litter and measured litter mass-loss rate, the activities of cellulolytic and ligninolytic enzymes, and the residual lignocellulose components. Under low nitrogen conditions (N1), transcriptome sequencing was performed for all three nitrogen sources and the control to identify differentially expressed CAZyme genes; Key targets were validated by RT-qPCR. The results indicate that low nitrogen concentrations promote lignocellulose degradation, whereas higher concentrations exert the opposite effect. NH₄Cl-N1 was most effective, yielding the highest mass-loss rate (9.823%), significant increases in six key lignocellulose-degrading enzymes, and the greatest reductions in residual lignocellulose. Transcriptomics showed that NH₄Cl triggered 1,101 differentially expressed genes, with enrichment in two-component systems, glycolysis/gluconeogenesis, and ABC transporters. Within CAZymes, GH1 genes (bglC, bglA, bglH, GYO_RS25640) and AA genes (cotA, glcD) were significantly upregulated under NH₄Cl-N1; RT-qPCR corroborated these trends. Correlation analysis further demonstrated significant positive associations between the expression of bglH and GYO_RS25640 correlated positively with β-glucosidase, filter paperase, and lignin peroxidase activities, and negatively with hemicellulose and lignin contents. Overall, this study revealed the regulatory mechanisms by which nitrogen form and concentration modulate lignocellulose degradation pathways in Bacillus subtilis LP-10, providing important references for the microbial-mediated utilization of lignocellulosic biomass resources in forest litter.

Indexed as

Bacillus subtilisBacterial ProteinsLigninNitrogenBacterial ProteinsLigninlignocelluloseNitrogenBacillus subtilisLignocelluloseMicrocosm experimentNitrogen formsTranscriptome analysis

Identifiers

PMID41801331

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.