Evidence map›Paper›PMID 41800384›Full record

ArticleBioinformatics advances2026

AxioSAFE: an accessible, semi-automatic filtering tool for the curation of genotyping datasets.

Lorenzo Spina, Nicholas P Howard, Stijn Vanderzande, Giorgio Tumino, Michela Troggio, Eric van de Weg, Diego Micheletti, Luca Bianco

Abstract read
In one paragraph

Article in Bioinformatics advances, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lorenzo SpinaResearch and Innovation Centre, Edmund Mach Foundation, San Michele all'Adige 38098, Italy.
Nicholas P HowardFresh Forward Holding Breeding & Mkt B V, Huissen 6851 ET, The Netherlands.
Stijn VanderzandePlant Breeding, Wageningen University and Research, Wageningen 6700AJ, The Netherlands.
Giorgio TuminoPlant Breeding, Wageningen University and Research, Wageningen 6700AJ, The Netherlands.
Michela TroggioResearch and Innovation Centre, Edmund Mach Foundation, San Michele all'Adige 38098, Italy.
Eric van de WegPlant Breeding, Wageningen University and Research, Wageningen 6700AJ, The Netherlands.
Diego MichelettiResearch and Innovation Centre, Edmund Mach Foundation, San Michele all'Adige 38098, Italy.
Luca BiancoResearch and Innovation Centre, Edmund Mach Foundation, San Michele all'Adige 38098, Italy.ORCID https://orcid.org/0000-0002-0196-8422

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Motivation: Genotyping datasets generated via the Thermo Fisher Axiom Results: AxioSAFE (Axiom SNP Assessment and Filtering Engine) is a semi-automatic computer tool for the curation of single nucleotide polymorphism (SNP) genotyping datasets generated via Thermo Fisher Axiom Availability and implementation: AxioSAFE is a Python program that can be either used via the command line interface or through a graphical user interface (GUI) and is provided as a Docker container available on DockerHub at https://hub.docker.com/r/lzspin/axiosafe, which includes all required libraries, software, and a tutorial dataset. The source code and documentation are available at https://bitbucket.org/lzspin/axiosafe/. The apple dataset used for the development of AxioSAFE is available at DOI: https://doi.org/10.5281/zenodo.18034024.

Identifiers

PMID41800384
PMCPMC12967218

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.