Evidence map›Paper›PMID 41796364›Full record

ArticleMicrobial cell factories2026

Engineering serine metabolism to enhance AOX1 promoter self-induction in formate dehydrogenase-deficient Komagataella phaffii.

Rocio Cozmar, Julio Berrios, Patrick Fickers

Abstract read
In one paragraph

Article in Microbial cell factories, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Rocio CozmarMicrobial Processes and Interactions, TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, University of Liege, Gembloux, Belgium.
Julio BerriosSchool of Biochemical Engineering, Pontificia Universidad Católica de Valparaíso, Valparaiso, Chile.
Patrick FickersMicrobial Processes and Interactions, TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, University of Liege, Gembloux, Belgium. pfickers@Uliege.be.ORCID http://orcid.org/0000-0002-2600-5833

Funding

Beca Doctorado Nacional 21211350ERASMUS+ 2022-2023 Grant agreement for mobility participants PIC:999854952, E10208749Wallonie-Bruxelles International SUB/2019/435787 (RIO4), SUB/2023/591923/MOD (RI06) and SUB/2023/585456 (RC06)
6 · The paper itself

Abstract

backgroundThe methylotrophic yeast Komagataella phaffii is a premier host for recombinant protein (rProt) production, which traditionally relies on methanol induction of the alcohol oxidase 1 promoter (PAOX1). However, the flammability and associated industrial limitations of methanol have motivated the search for methanol-free induction systems. We recently demonstrated that disruption of formate dehydrogenase gene (FDH) in K. phaffii allows endogenous formate derived from tetrahydrofolate (THF)-mediated C1 metabolism to induce PAOX1 without the addition of external inducers. Therefore, we hypothesized that increasing intracellular formate production by enhancing serine biosynthesis could further improve promoter induction and rProt productivity.

resultsOverexpression of SER3, encoding 3-phosphoglycerate dehydrogenase, the rate-limiting enzyme in serine synthesis, significantly increased PAOX1-driven expression of an intracellular reporter protein (eGFP) and secreted glucose oxidase (Gox) from Aspergillus niger without compromising cell fitness. Enhanced formate accumulation and stronger PAOX1 induction were observed in both microbioreactor and bioreactor cultivations using sorbitol or glycerol-sorbitol mixtures. In GOX-mSER3 strain grown in bioreactor, SER3 overexpression led to a 30% increase in specific Gox activity compared with that of the parental FdhKO strain.

conclusionsThis study provides a cost-effective metabolic engineering strategy for methanol-free, self-inducible expression systems in K. phaffii based on PAOX1, enabling safer and more sustainable industrial rProt production.

Indexed as

Formate DehydrogenasesMetabolic EngineeringPromoter Regions, GeneticSaccharomycetalesSerineAlcohol OxidoreductasesAspergillus nigerBioreactorsFormatesFungal ProteinsMethanolRecombinant Proteinsalcohol oxidaseAlcohol OxidoreductasesFormate DehydrogenasesFormatesformic acidFungal ProteinsMethanolRecombinant ProteinsSerineAOX1 promoterFormateFormate dehydrogenaseKomagataella phaffiiRecombinant proteinSerine metabolism

Identifiers

PMID41796364
PMCPMC13081640

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.