Evidence map›Paper›PMID 41795757›Full record

ArticleInternational journal of clinical oncology2026

Comparative genomic landscape of primary and metastatic bladder urothelial carcinoma in a large-scale cohort.

Akira Ohtsu, Yusuke Otani, Seiji Arai, Anna Rogachevskaya, Vanessa D Chin, Shinichi Toyooka, Kazuhiro Suzuki, Wenyi Wei, Atsushi Tanaka

Abstract readComparative Study
In one paragraph

Article in International journal of clinical oncology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

9 authors.

Akira Ohtsu *Department of Urology, Gunma University Graduate School of Medicine, 3-9-22, Showa-machi, Maebashi, Gunma, 371-8511, Japan.
Yusuke Otani *Harvard Medical School, Boston, MA, USA.
Seiji AraiDepartment of Urology, Gunma University Graduate School of Medicine, 3-9-22, Showa-machi, Maebashi, Gunma, 371-8511, Japan. a-seiji@gunma-u.ac.jp.
Anna RogachevskayaHarvard Medical School, Boston, MA, USA.
Vanessa D ChinUMass Chan Medical School, UMass Memorial Medical Center, 55 Lake Ave. North, Worcester, MA, 01655, USA.
Shinichi ToyookaDepartment of General Thoracic Surgery and Breast and Endocrinological Surgery, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan.
Kazuhiro SuzukiDepartment of Urology, Gunma University Graduate School of Medicine, 3-9-22, Showa-machi, Maebashi, Gunma, 371-8511, Japan.
Wenyi WeiHarvard Medical School, Boston, MA, USA.
Atsushi TanakaHarvard Medical School, Boston, MA, USA. atanaka@bidmc.harvard.edu.ORCID http://orcid.org/0000-0003-1229-4539

Funding

Evaluation of Patient Factors and Sample Pre-Analytics on Predictive Multiplex Immunohistochemical Assays in Immuno-Oncology PatientsU01CA263986 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Wenyi Wei · 2022 to 2026
$1.3M
NCI NIH HHS U01 CA263986the Japan Society for the Promotion of Science (JSPS) Grant Number 23K08773
6 · The paper itself

Abstract

backgroundMetastatic bladder urothelial carcinoma has poor survival, and large comparative genomic studies using uniform targeted sequencing of paired primary and metastatic lesions remain limited. We compared gene- and pathway-level alterations between primary and metastatic tumors

methodsWe analyzed 2,880 bladder urothelial carcinoma samples (2,305 primary; 575 metastatic) from 2,343 patients profiled with MSK-IMPACT. Somatic mutations and copy number alterations were integrated per gene and compared between primary and metastatic samples in the full cohort and in a paired subset using standard statistical tests.

resultsPrimary and metastatic samples showed broadly similar driver landscapes. In the full cohort, KDM6A, FGFR3, STAG2, and ERCC2 were more frequently altered in primary tumors, whereas no individual genes were enriched in metastases; these differences were not significant in paired analyses. At the pathway level, TP53 pathway alterations were relatively more frequent in metastases, while DNA damage response alterations were enriched in primary tumors; other pathways showed comparable alteration rates. Apoptosis-focused analyses identified no significant gene-level differences, but suggested a trend toward higher alteration rates in the TP53 pathway and apoptosis regulators in metastases.

conclusionPrimary and metastatic lesions of bladder urothelial carcinoma show broadly similar gene- and pathway-level alteration profiles on targeted DNA sequencing. TP53 pathway and apoptosis-related alterations are modestly more frequent in metastases, consistent with impaired stress responses and apoptosis evasion.

Indexed as

Carcinoma, Transitional CellUrinary Bladder NeoplasmsCohort StudiesDNA Copy Number VariationsFemaleGenomicsHigh-Throughput Nucleotide SequencingHumansMaleMutationNeoplasm MetastasisTumor Suppressor Protein p53TP53 protein, humanTumor Suppressor Protein p53Bladder urothelial carcinomaDNA damage responseMetastasisPrimaryTargeted next-generation sequencingTP53 pathway

Identifiers

PMID41795757
PMCPMC13347192

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.