Evidence map›Paper›PMID 41794770›Full record

ArticleNature communications2026

Accurate atomic resolution XFEL structures of a metalloenzyme reveal key insights into its catalytic mechanism.

Samuel L Rose, Svetlana Antonyuk, Felix M Ferroni, Hiroshi Sugimoto, Keitaro Yamashita, Kunio Hirata, Hideo Ago, Go Ueno, Hironori Murakami, Robert R Eady and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Samuel L Rose *Molecular Biophysics Group, Life Sciences Building, Institute of Systems, Molecular and Integrative Biology, Faculty of Health and Life Sciences, University of Liverpool, Liverpool, UK.ORCID http://orcid.org/0000-0003-4824-4066
Svetlana Antonyuk *Molecular Biophysics Group, Life Sciences Building, Institute of Systems, Molecular and Integrative Biology, Faculty of Health and Life Sciences, University of Liverpool, Liverpool, UK.
Felix M FerroniDepartamento de Física, Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral (UNL). CONICET, Santa Fe, Argentina.ORCID http://orcid.org/0000-0001-6257-6898
Hiroshi SugimotoRIKEN SPring-8 Center, Hyogo, Japan.ORCID http://orcid.org/0000-0002-3140-8362
Keitaro YamashitaResearch Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-5442-7582
Kunio HirataRIKEN SPring-8 Center, Hyogo, Japan.ORCID http://orcid.org/0000-0002-1491-6509
Hideo AgoRIKEN SPring-8 Center, Hyogo, Japan.ORCID http://orcid.org/0000-0002-9040-488X
Go UenoRIKEN SPring-8 Center, Hyogo, Japan.ORCID http://orcid.org/0000-0003-0648-3632
Hironori MurakamiRIKEN SPring-8 Center, Hyogo, Japan.
Robert R EadyMolecular Biophysics Group, Life Sciences Building, Institute of Systems, Molecular and Integrative Biology, Faculty of Health and Life Sciences, University of Liverpool, Liverpool, UK.
Takehiko ToshaGraduate School of Life Science, University of Hyogo, Hyogo, Japan. ttosha@sci.u-hyogo.ac.jp.ORCID http://orcid.org/0000-0002-8971-0759
Masaki YamamotoRIKEN SPring-8 Center, Hyogo, Japan. yamamoto@riken.jp.ORCID http://orcid.org/0000-0002-1311-1768
S Samar HasnainMolecular Biophysics Group, Life Sciences Building, Institute of Systems, Molecular and Integrative Biology, Faculty of Health and Life Sciences, University of Liverpool, Liverpool, UK. s.s.hasnain@liverpool.ac.uk.ORCID http://orcid.org/0000-0002-2854-4718

Funding

RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/N013972/1
6 · The paper itself

Abstract

Metalloproteins represent a major fraction of the protein kingdom and often exploit the redox chemistry of transition metals to drive key biological events involving proton and electron transfer. Copper is one of the most widely used transition metals whose redox properties are utilised in both electron transfer and catalysis of chemical substrates. Copper nitrite reductases (CuNiRs) utilise two types of copper centres and have become a model system for studying complex biological events that underpin the reaction mechanisms of redox enzymes, including proton-coupled electron transfer and substrate gating. We utilised the higher X-ray energy (13 keV) available at the SACLA X-ray Free Electron Laser (XFEL) and SHELXL refinement to obtain accurate atomic resolution structures of CuNiRs at ~1 Å from three organisms - in the oxidised (low and high pH), reduced and substrate-bound states. A consistent picture now emerges with the observation of a pentacoordinated oxidised catalytic type-2 Cu (T2Cu

Indexed as

CopperMetalloproteinsNitrite ReductasesBiocatalysisCatalysisCrystallography, X-RayElectron TransportModels, MolecularOxidation-ReductionX-RaysCopperMetalloproteinsnitrite reductase, copper-containingNitrite Reductases

Identifiers

PMID41794770
PMCPMC13103080

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.