Evidence map›Paper›PMID 41793813›Full record

ArticleDiagnostic microbiology and infectious disease2026

Comparative evaluation of conventional and nanopore approaches in onychomycosis diagnosis.

Janeth Villanueva-Reyes, Andrés Mauricio González-Ríos, Maria Del Pilar Crespo-Ortiz, María Inés Álvarez-Valle

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In one paragraph

Article in Diagnostic microbiology and infectious disease, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Janeth Villanueva-ReyesInternal Medicine Department, Dermatology section. Faculty of Health, Universidad del Valle Cl 4B #36-00. Cali, Colombia; Dermatology. Hospital Universitario del Valle Cl. 5 #36-08. Cali, Colombia. Electronic address: janeth.villanueva@correounivalle.edu.co.
Andrés Mauricio González-RíosVirem Research Group, Department of Microbiology, Universidad del Valle Cl 4B #36-00 Cali, Colombia. Electronic address: andres.mauricio.gonzalez@correounivalle.edu.co.
Maria Del Pilar Crespo-OrtizMicrobiology and Infectious Diseases Research Group, Department of Microbiology, Universidad del Valle. Cl 4B #36-00, Cali, Colombia. Electronic address: maria.crespo.ortiz@correounivalle.edu.co.
María Inés Álvarez-ValleMicrobiology and Infectious Diseases Research Group, Department of Microbiology, Universidad del Valle. Cl 4B #36-00, Cali, Colombia. Electronic address: maria.alvarez@correounivalle.edu.co.

Funding

Emerging Neuroviruses and Neurological Inflammatory DiseasesR01NS110122 · NINDS · JOHNS HOPKINS UNIVERSITY · PI PARDO-VILLAMIZAR, CARLOS A · 2019 to 2023
$1.7M
NINDS NIH HHS R01 NS110122
6 · The paper itself

Abstract

backgroundOnychomycosis is a frequent and chronic nail infection caused by dermatophytes, yeast, and non-dermatophyte molds (NDM). Detection of the causative agent is relevant to overcoming recurrent infections and improving treatment. Combined microscopy and culture are the diagnostic gold standard; however, more sensitive tests are needed to speed detection. This work aimed to assess fungal nail diagnosis using conventional and molecular techniques. We explored the potential of nanopore sequencing for fungal detection.

methodsA total of 104 nail samples from 51 patients with onychomycosis and 53 individuals with healthy nails were subjected to potassium hydroxide(KOH) microscopy, culture, PCR, and nanopore sequencing. Sensitivity was calculated using a composite reference standard based on microscopy and culture.

resultsDistal subungual onychomycosis was the most frequent clinical presentation (43.1%). Infections were primarily caused by dermatophytes 60% (21), followed by yeast 22.9% (8) and NDM 11.4% (4), 5.7% (2) were mixed infections. The prevalent pathogens were T. rubrum (40%), T. mentagrophytes (14.3%), and C. albicans (14.3%). 90.2% (46/51) of patients were positive by KOH, 68.6% (35/51) by culture (58.8%, 30/51 positive in both), and 58.8%(30/51) were sequenced by nanopore. Fungal DNA sequences were identified in 65.7% (23/35) of culture-positive patients. Eight samples from healthy nails were positive for fungal DNA and were considered transient microbiota.

conclusionDermatophytes are the predominant causative agent; however, at least 30% of nail infections are caused by yeast and NDM. Conventional diagnosis remains challenging; alternatively, nanopore sequencing represents a complementary diagnostic tool that should be further optimized for clinical application.

Indexed as

Nanopore SequencingOnychomycosisAdolescentAdultAgedArthrodermataceaeDNA, FungalFemaleHumansMaleMicroscopyMiddle AgedMolecular Diagnostic TechniquesNailsNanoporesPolymerase Chain ReactionDNA, FungalCultureDermatophyte infectionFungal infectionMolecular diagnosticsNail diseaseNanopore sequencingPCRYeast infection

Identifiers

PMID41793813
PMCPMC13348774

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.