ArticleScientific data2026
Chromosome-level genome assembly and annotation of the Rhinogobio ventralis, an endangered endemic fish from the Yangtze River.
Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Rhinogobio ventralis, a critically endangered freshwater fish endemic to the upper Yangtze River, holds significant ecological and economic value. Here, we present a high-quality chromosome-level genome assembly of R. ventralis. Using a combination of PacBio HiFi long-read sequencing (>99% single-read accuracy), DNBSEQ-T7 short-read sequencing (95.7% of bases ≥ Q30), and Hi-C scaffolding, we assembled a 1,039.34 Mb genome comprising 478 contigs with a contig N50 of 18.1 Mb. Hi-C data anchored 97.9% of the assembled sequence onto 25 chromosomes. The final assembly is highly complete (BUSCO completeness 96.6%) and accurate (QV 48.22). Repetitive elements account for 63.44% of the genome, with DNA transposons alone representing 42.31%. We predicted 23,246 protein-coding genes, of which 98.6% have functional annotations. This high-quality genome assembly provides a valuable resource for future studies on the genetics, adaptive evolution, and conservation of R. ventralis and other endangered freshwater fishes.
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