Evidence map›Paper›PMID 41789433›Full record

ArticleAccess microbiology2026

Assessing sequencing-based pathogen surveillance of a recreational swimming area in Oslo, Norway.

Vegard Eldholm, Daniel Straume, Ola B Brynildsrud

Abstract read
In one paragraph

Article in Access microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Vegard EldholmDivision of Infection Control, Norwegian Institute of Public Health, Lovisenberggata 6, 0456, Oslo, Norway.ORCID https://orcid.org/0000-0001-6721-3375
Daniel StraumeFaculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Science, 1430, Ås, Norway.
Ola B BrynildsrudDivision of Infection Control, Norwegian Institute of Public Health, Lovisenberggata 6, 0456, Oslo, Norway.ORCID https://orcid.org/0000-0001-7566-4133

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sequencing-based surveillance can enable rapid and sensitive detection of environmental pathogens. The Oslofjord inlet is relatively narrow and is exposed to substantial human activity, including occasional wastewater contamination. Restricted water exchange also allows for occasional summer heat spells with elevated water temperatures. Thus, infections stemming from wastewater contamination and seasonal opportunistic pathogens are potential health threats to recreational users of the fjord. In this pilot study, we assess the suitability of sequencing-based surveillance for the detection of pathogens at a popular urban location for recreational water activities, employing both long- and short-read sequencing platforms, paired with selective culturing. We find both metagenomic and full-length 16S sequencing to be promising tools for surveillance of seasonal opportunistic

Indexed as

eDNAenvironmental pathogensfull-length 16SIllumina sequencingmetagenomicsnanopore sequencingRhodoferaxsewage contaminationVibrio

Identifiers

PMID41789433
PMCPMC12958363

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.