Evidence map›Paper›PMID 41789145›Full record

ArticleInnovation (Cambridge (Mass.))2026

A genomic compendium of hundreds of teleost fishes reveals their evolutionary landscape.

Yue Song, Zengbao Yuan, Chengchi Fang, Suyu Zhang, Liandong Yang, Mingliang Hu, Inge Seim, Shanshan Liu, Xiaolin Tian, Cheng Wang and 44 more

Abstract read
In one paragraph

Article in Innovation (Cambridge (Mass.)), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Novel Mitogenome ofInternational journal of molecular sciences · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

54 authors.

Yue SongBGI Research, Qingdao 266555, China.
Zengbao YuanBGI Research, Qingdao 266555, China.
Chengchi FangKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, Chinese Academy of Sciences, Wuhan 430072, China.
Suyu ZhangBGI Research, Qingdao 266555, China.
Liandong YangKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, Chinese Academy of Sciences, Wuhan 430072, China.
Mingliang HuShaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710129, China.
Inge SeimMarine Mammal and Marine Bioacoustics Laboratory, Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences, Sanya 572000, China.
Shanshan LiuBGI Research, Qingdao 266555, China.
Xiaolin TianInstitute of Marine Science and Technology, Shandong University, Qingdao 266237, China.
Cheng WangKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, Chinese Academy of Sciences, Wuhan 430072, China.
Yaolei ZhangBGI Research, Qingdao 266555, China.
Zhaohui PanKey CAS Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences (CAS), Beijing 100044, China.
Qingming QuState Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen 361102, China.
Hongyue LiuInstitute of Marine Science and Technology, Shandong University, Qingdao 266237, China.
Yuanning LiInstitute of Marine Science and Technology, Shandong University, Qingdao 266237, China.
Luyuan PanNational Aquatic Biological Resource Center, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China.
Chenglong ZhuShaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710129, China.
Hengjia YangBGI Research, Qingdao 266555, China.
Xiao ChenSouth China Agricultural University, Guangzhou 510642, China.
Mengqi ZhangBGI Research, Qingdao 266555, China.
Gang HouCollege of Fisheries, Guangdong Ocean University, Zhanjiang 524088, China.
Meiru LiuBGI Research, Qingdao 266555, China.
Jiahao WangBGI Research, Qingdao 266555, China.
Qun LiuBGI Research, Qingdao 266555, China.
Xiaoni GanKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, Chinese Academy of Sciences, Wuhan 430072, China.
Honghui ZengKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, Chinese Academy of Sciences, Wuhan 430072, China.
Wenjie XuShaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710129, China.
Chenguang FengShaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710129, China.
Mengjun WangKey CAS Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences (CAS), Beijing 100044, China.
Zhuocheng ZhouProfessional Committee of Native Aquatic Organisms and Water Ecosystem of China Fisheries Association, Beijing, China.
Song HeRed Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Chenglong LiuBGI Research, Qingdao 266555, China.
Mengjun YuBGI Research, Qingdao 266555, China.
Hanbo LiBGI Research, Qingdao 266555, China.
Jian LiangState Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining 810016, China.
He ZhangBGI Research, Qingdao 266555, China.
Yongxin LiShaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710129, China.
Simon Ming-Yuen LeeDepartment of Food Science and Nutrition, and PolyU-BGI Joint Research Centre for Genomics and Synthetic Biology in Global Ocean Resources, and State Key Laboratory of Chemical Biology and Drug Discovery, The Hong Kong Polytechnic University, Hong Kong 999077, China.
Yonghua SunNational Aquatic Biological Resource Center, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China.
Qiang QiuShaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710129, China.
Xin LiuBGI Research, Shenzhen 518083, China.
Karsten KristiansenLaboratory of Integrative Biomedicine, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark.
Wen WangShaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710129, China.
Jian WangBGI Research, Shenzhen 518083, China.
Min ZhuKey CAS Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences (CAS), Beijing 100044, China.
Huanming YangBGI Research, Shenzhen 518083, China.
Songlin ChenState Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China.
Jianfang GuiKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, Chinese Academy of Sciences, Wuhan 430072, China.
Yiyu ChenKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, Chinese Academy of Sciences, Wuhan 430072, China.
Guojie ZhangCenter of Evolutionary & Organismal Biology, and Women's Hospital, Zhejiang University School of Medicine, Hangzhou 310058, China.
Xun XuBGI Research, Qingdao 266555, China.
Kun WangShaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710129, China.
Guangyi FanBGI Research, Qingdao 266555, China.
Shunping HeKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, Chinese Academy of Sciences, Wuhan 430072, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The remarkable morphological diversity and species abundance of teleost fishes offer a valuable resource for understanding vertebrate evolution. In phase I of the Fish10K project, genomes of 110 teleost species were sequenced and assembled, filling gaps in 3 previously unrepresented orders, and integrated with existing data to generate a 464 species whole-genome alignment spanning all teleost orders-the largest such resource beyond mammals and birds. Comparative analyses reveal distinctive genomic features, including progressive genome compaction with shortened intron lengths relative to non-teleost ray-finned fishes. Analysis of the transposable element (TE) landscape suggests a potential association between TE expansion in teleost genomes and different habitats, as well as the uniqueness of teleosts' DNA-dominated transposon composition among vertebrates. Genome-wide phylogenetic analyses refute the widely accepted monophyly of "Siluriphysi" hypothesis and support the hypothesis of a single origin of electroreception followed by secondary loss in Characiformes. A refined evolutionary timeline of teleosts by whole-genome alignment resource placed teleosts at ∼253 million years ago, predating the Permian-Triassic extinction, and delineates three diversification phases punctuated by mass extinctions, challenging continuous post-Cretaceous-Palaeogene acceleration models. This study establishes a large-scale genomic database and a foundational whole-genome alignment resource, advancing insights into the landscape of teleost genomic architecture and macroevolution.

Indexed as

fish10Kphylogenyteleoststeleost-specific conserved elementswhole-genome alignment

Identifiers

PMID41789145
PMCPMC12957567

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