Evidence map›Paper›PMID 41787412›Full record

ArticleGenome biology2026

Augmented CENH3 loading is accompanied by transcriptional and epigenetic reprogramming at rice centromeres during meiosis.

Lei Cao, Yangzi Zhao, Hanli You, Huixin Liu, Bingxin Wang, Yonghang Run, Han Yang, Minsi Wen, Jiawei Chen, Pengtao Zhao and 4 more

Abstract read
In one paragraph

Article in Genome biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

14 authors.

Lei Cao *Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding/Key Laboratory of Plant Functional Genomics of the Ministry of Education, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China.
Yangzi Zhao *Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding/Key Laboratory of Plant Functional Genomics of the Ministry of Education, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China.
Hanli YouJiangsu Key Laboratory of Crop Genomics and Molecular Breeding/Key Laboratory of Plant Functional Genomics of the Ministry of Education, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China.
Huixin LiuState Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.
Bingxin WangState Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.
Yonghang RunState Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, CIC-MCP, Nanjing Agricultural University, Nanjing, Jiangsu, China.
Han YangCollege of Life Science, Huaibei Normal University, Huaibei, 235000, China.
Minsi WenState Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.
Jiawei ChenState Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.
Pengtao ZhaoState Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, CIC-MCP, Nanjing Agricultural University, Nanjing, Jiangsu, China.
Yi ShenState Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.
Yafei LiState Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.
Wenli ZhangState Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, CIC-MCP, Nanjing Agricultural University, Nanjing, Jiangsu, China. wzhang25@njau.edu.cn.
Zhukuan ChengJiangsu Key Laboratory of Crop Genomics and Molecular Breeding/Key Laboratory of Plant Functional Genomics of the Ministry of Education, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China. zkcheng@genetics.ac.cn.

Funding

National Key R&D Program of China 2023YFA0913500National Natural Science Foundation of China U2102219Natural Science Foundation of Anhui Province 2308085QC81
6 · The paper itself

Abstract

backgroundCentromere identity in eukaryotes is defined epigenetically by CENH3 (CENPA), a specialized histone H3 variant essential for kinetochore establishment and faithful chromosome segregation. However, the regulatory mechanisms governing CENH3 loading during meiosis and how they differ from mitotic patterns remain insufficiently elucidated.

resultsHere we characterize the dynamics of CENH3 deposition across meiosis and compare them with mitotic loading in rice. Quantitative fluorescence imaging reveals a pronounced increase of CENH3 signal during meiotic prophase I, coinciding with increased accumulation of multiple kinetochore components. Super-resolution stimulated emission depletion microscopy further confirms a distinct peak of CENH3 loading at zygotene. Through low-input ChIP-seq integrated with multi-omics profiling of purified meiocytes, we find that this meiosis-specific enrichment reflects both expanded and intensified CENH3 deposition, predominantly at Ty3-Gypsy retrotransposons. This remodeling is accompanied by reduced transcription of mRNAs and small RNAs, along with a reduction in CHG methylation and H3K9me2 heterochromatin marks.

conclusionOur findings uncover a previously unrecognized, meiotic-specific pattern of CENH3 loading in rice and highlight a coordinated regulatory network linking centromeric chromatin reorganization, transcriptional repression, and epigenetic modification during early meiotic progression.

Indexed as

CentromereCentromere Protein AEpigenesis, GeneticMeiosisOryzaPlant ProteinsTranscription, GeneticGene Expression Regulation, PlantHistonesKinetochoresCentromere Protein AHistonesPlant ProteinsCENH3CentromereDNA methylationHistone modificationMeiocyteRice

Identifiers

PMID41787412
PMCPMC13072532

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.