Evidence map›Paper›PMID 41786989›Full record

ArticleNature microbiology2026

Prediction of eukaryotic cellular complexity in Asgard archaea using structural modelling.

Stephan Köstlbacher, Jolien J E van Hooff, Kassiani Panagiotou, Daniel Tamarit, Valerie De Anda, Kathryn E Appler, Brett J Baker, Thijs J G Ettema

Abstract read
In one paragraph

Article in Nature microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Stephan KöstlbacherLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands. stephan.koestlbacher@aithyra.at.ORCID http://orcid.org/0000-0001-6710-7572
Jolien J E van HooffLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.
Kassiani PanagiotouLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.ORCID http://orcid.org/0009-0006-1191-7326
Daniel TamaritLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0002-4940-719X
Valerie De AndaDepartment of Marine Science, Marine Science Institute, University of Texas at Austin, Port Aransas, TX, USA.
Kathryn E ApplerDepartment of Marine Science, Marine Science Institute, University of Texas at Austin, Port Aransas, TX, USA.ORCID http://orcid.org/0000-0002-1219-1786
Brett J BakerDepartment of Marine Science, Marine Science Institute, University of Texas at Austin, Port Aransas, TX, USA.ORCID http://orcid.org/0000-0002-5971-1021
Thijs J G EttemaLaboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands. thijs.ettema@wur.nl.ORCID http://orcid.org/0000-0002-6898-6377

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101142180Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) NWO-2021.059Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) VI.C.192.016Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) VI.Veni.212.099Simons Foundation 73592LPISimons Foundation Grant 73592LPIVolkswagen Foundation (VolkswagenStiftung) 96725
6 · The paper itself

Abstract

Asgard archaea played a key role in the origin of the eukaryotic cell, with extant genomes encoding relatives of diverse eukaryotic signature proteins (ESPs) involved in cellular organization. However, their often punctuated distribution and the absence of detectable homologues for many eukaryotic proteins limit our ability to reconstruct the cellular complexity of the Asgard archaeal ancestor of eukaryotes. Here we used de novo protein structure modelling and sequence similarity detection across an expanded Asgard archaeal genomic dataset to build a structural catalogue of the Asgard archaeal pangenome. We identified 908 'isomorphic' ESPs-Asgard archaeal proteins with statistically enriched structural matches to eukaryotic proteins, often bridging deep sequence divergence. These isomorphic ESPs are enriched in information storage and processing roles and contain key components of the eukaryotic Vault (MVP) and Commander (COMMD) complexes, with potential roles in cellular compartmentalization and endosomal processing. These findings expand the repertoire of eukaryotic-like proteins in Asgard archaea and suggest a higher degree of eukaryote-like cellular complexity in the archaeal ancestor of eukaryotes.

Indexed as

ArchaeaArchaeal ProteinsEukaryotaEukaryotic CellsEvolution, MolecularGenome, ArchaealModels, MolecularPhylogenyProtein ConformationArchaeal Proteins

Identifiers

PMID41786989
PMCPMC12962969

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.