Evidence map›Paper›PMID 41785014›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2026

Preexisting TCR Clones Drive Major Pathologic Responses in Patients with HNSCC Treated with Dual Immune Checkpoint Inhibitors.

Huaibin Ge, Housaiyin Li, Aditi Kulkarni, Zhangguo Chen, Pragati Upadhyay, Robert L Ferris, Jing H Wang

Erratum issuedAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Huaibin GeUPMC Hillman Cancer Center, Division of Malignant Hematology and Medical Oncology, Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania.ORCID 0000-0002-4726-7023
Housaiyin LiTumor Microenvironment Center, UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania.ORCID 0000-0001-6836-9224
Aditi KulkarniLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina.ORCID 0000-0002-0556-1806
Zhangguo ChenUPMC Hillman Cancer Center, Division of Malignant Hematology and Medical Oncology, Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania.ORCID 0000-0002-2741-0080
Pragati UpadhyayLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina.ORCID 0009-0006-5270-161X
Robert L FerrisLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina.ORCID 0000-0001-6605-2071
Jing H WangUPMC Hillman Cancer Center, Division of Malignant Hematology and Medical Oncology, Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania.ORCID 0000-0003-4343-2527

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHRISTOPHER J. BAKKENIST · 1988 to 2026
$158.0M
WILD TYPE P53-BASED ADJUVANT IMMUNOTHERAPY FOR SCCHNP50CA097190 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Heath Devin Skinner · 2004 to 2026
$49.6M
Mechanisms of PD-1 and Tim-3 crosstalk in tumor-infiltrating lymphocytesR01CA206517 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Robert L. Ferris, Lawrence P. Kane · 2016 to 2026
$4.6M
Identifying cellular and molecular signatures from distinct T cell receptor clonotypes associated with favorable immune checkpoint inhibitor responses in HNSCCsR01DE031947 · NIDCR · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Robert L. Ferris, Lazar Vujanovic · 2022 to 2026
$3.6M
Elucidating Mechanism of Immune Evasion in Head and Neck CancersR01DE027329 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI WANG, JING HONG, WANG, XIAO-JING · 2018 to 2022
$2.8M
Mechanistic connection between HPV-specific TCRs and therapeutic responses to ICI in HPV+ HNSCCR01CA282074 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Robert L. Ferris, Jing Hong Wang · 2024 to 2026
$2.0M
Analysis of high dimensional genomic dataset to reveal mechanistic insights on divergent outcomes of head and neck cancer using system biology modeling coupled with experimental validationR01DE034974 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SKINNER, HEATH DEVIN, WANG, JING HONG · 2025 to 2025
$1.9M
High-Throughput Computing for Genomics and Bioinformatics ResearchS10OD028483 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEE, ADRIAN V · 2021 to 2021
$574k
National Institutes of Health (NIH) P30-CA047904National Institutes of Health (NIH) P50-CA097190National Institutes of Health (NIH) R01-CA206517National Institutes of Health (NIH) R01-CA282074National Institutes of Health (NIH) R01-DE027329National Institutes of Health (NIH) R01-DE0284201National Institutes of Health (NIH) R01-DE031947National Institutes of Health (NIH) R01DE034974NCI NIH HHS P30 CA047904NCI NIH HHS P50 CA097190NCI NIH HHS R01 CA206517NCI NIH HHS R01 CA282074NIDCR NIH HHS R01 DE027329NIDCR NIH HHS R01 DE031947NIDCR NIH HHS R01 DE034974NIH HHS S10 OD028483
6 · The paper itself

Abstract

purposeImmune checkpoint inhibitors (ICI) elicit variable responses in head and neck squamous cell carcinoma (HNSCC), yet mechanisms driving major pathologic responses (MPR) remain poorly defined. We sought to evaluate longitudinal CD8 T-cell repertoire evolution to identify determinants of MPR. PATIENTS AND

methodsWe analyzed high-resolution single-cell T-cell receptor (TCR) sequencing data from paired pretreatment and posttreatment CD8 tumor-infiltrating lymphocytes obtained from patients with HNSCC treated with neoadjuvant anti-PD-1 combined with either anti-CTLA-4 or anti-LAG3.

resultsContrary to the clonal replacement hypothesis, posttreatment CD8 T-cell pools were dominated by preexisting TCR clones regardless of clinical outcome. MPR was uniquely characterized by higher abundance and greater expansion magnitude of super-expanded clones. We developed the TCR adaptivity index (TAI) to quantify coordinate flux (expansion and contraction) of all TCR clones detected across pretreatment and posttreatment time points; this index emerged as the most significant parameter associated with MPR. Importantly, clonal expansion in non-MPR was uncoupled from the productive, therapy-induced transcriptional reprogramming-characterized by markers of effector vigor and cellular fitness-that was observed in MPR. Furthermore, expansion dynamics positively correlated with predicted tumor reactivity as calculated by the tumor-reactive signature (TRS) score. Finally, a TRS-integrated TAI remained significantly correlated with MPR.

conclusionsDual-ICI drives MPR predominantly through the adaptivity and functional reprogramming of preexisting immunity. Successful therapy relies on a coordinate repertoire response that promotes transition of putative tumor-reactive super-expanders into productive functional states. TRS-integrated TAI provides a high-throughput framework incorporating clonal dynamics and functional reprogramming to predict therapeutic efficacy.

Indexed as

Head and Neck NeoplasmsImmune Checkpoint InhibitorsReceptors, Antigen, T-CellSquamous Cell Carcinoma of Head and NeckAgedCD8-Positive T-LymphocytesFemaleHumansLymphocytes, Tumor-InfiltratingMaleMiddle AgedImmune Checkpoint InhibitorsReceptors, Antigen, T-Cell

Identifiers

PMID41785014
PMCPMC13094506

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.