Evidence map›Paper›PMID 41781333›Full record

ArticleGenome research2026

Functional genomics analysis of developing zebrafish and human endoderm reveals highly conserved

Daniela M Riley, Randa Elsayed, Mark D Walsh, Simaran Johal, Ying Lin, Harry Walton, Till Bretschneider, Sascha Ott, Andrew C Nelson

Abstract read
In one paragraph

Article in Genome research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Daniela M Riley *Warwick Medical School, University of Warwick, Coventry CV4 7AL, United Kingdom.
Randa Elsayed *Warwick Medical School, University of Warwick, Coventry CV4 7AL, United Kingdom.
Mark D Walsh *School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.
Simaran JohalSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.ORCID 0009-0007-2962-1344
Ying LinIntegrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Biological Science Research Center, Southwest University, Chongqing 400715, China.
Harry WaltonWarwick Medical School, University of Warwick, Coventry CV4 7AL, United Kingdom.
Till BretschneiderDepartment of Computer Science, University of Warwick, Coventry CV4 7AL, United Kingdom.
Sascha OttWarwick Medical School, University of Warwick, Coventry CV4 7AL, United Kingdom.ORCID 0000-0002-5411-8114
Andrew C NelsonSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom; a.nelson.1@warwick.ac.uk.ORCID 0000-0003-1311-8051

Funding

BBSRC BB/M01116X/1, MR/S021531/1BBSRC MR/N014294/1 AND MR/W007053/1Wellcome Trust MR/S021531/1 AND 210177/Z/18/Z
6 · The paper itself

Abstract

Although vertebrate species are superficially diverse, they share key commonalities in terms of overall morphology, as well as organ configuration and function. Maintenance of these traits during evolution is partially explained by the conservation of critical genes governing embryonic development. However, for conserved genes to deliver consistent developmental outcomes between species, similar gene regulatory programs and gene expression patterns must also be maintained. The endoderm germ layer makes major contributions to the respiratory and gastrointestinal tracts and to associated organs including the liver and pancreas. We used functional genomic approaches to identify highly conserved endodermal

Indexed as

EndodermGenomicsOrganogenesisRegulatory Sequences, Nucleic AcidZebrafishAnimalsBinding SitesConserved SequenceEvolution, MolecularGene Expression Regulation, DevelopmentalHumansPancreasTranscription FactorsTranscription Factors

Identifiers

PMID41781333
PMCPMC7619044

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.