Evidence map›Paper›PMID 41776677›Full record

ArticleBiotechnology for biofuels and bioproducts2026

Evaluating isoprenol production using the IPP-bypass pathway in the oleaginous yeast Rhodosporidium toruloides.

Valentina E Garcia, Gina M Geiselman, Hee Jin Hwang, Yan Chen, Jennifer W Gin, Jack McFadden-Mitchell, Veronica Montgomery, Ramu Kakumanu, Shubhasish Goswami, Joshua McCauley and 6 more

Abstract read
In one paragraph

Article in Biotechnology for biofuels and bioproducts, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Valentina E GarciaJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Gina M GeiselmanJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Hee Jin HwangJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Yan ChenJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Jennifer W GinJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Jack McFadden-MitchellSan Diego State University, San Diego, CA, 92182, USA.
Veronica MontgomeryJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Ramu KakumanuJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Shubhasish GoswamiJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Joshua McCauleyJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Paul A AdamczykDepartment of Biomaterials and Biomanufacturing, Sandia National Laboratories, Livermore, CA, 94550, USA.
Edward E K BaidooJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Christopher J PetzoldJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Blake A SimmonsJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Taek Soon LeeJoint BioEnergy Institute, Emeryville, CA, 94608, USA. tslee@lbl.gov.
John M GladdenJoint BioEnergy Institute, Emeryville, CA, 94608, USA. jmgladden@lbl.gov.

Funding

Sandia National Laboratories DE-NA0003525U.S. Department of Energy, Office of Science, Biological and Environmental Research Program DE-AC02-05CH11231
6 · The paper itself

Abstract

backgroundTo strengthen the national energy supply, there is an increasing demand for domestically generated aviation fuels. Bio-derived advanced aviation fuels offer the opportunity to meet this domestic need while presenting a unique opportunity to investigate the production of novel aviation fuels. Isoprenol, a chemical precursor to such novel fuels, has been shown to be a biologically producible compound in model organisms, but its bio-producibility needs to be further explored in organisms more compatible with industrial bioproduction.

resultsIn this work, we evaluate isoprenol production using the promising bioproduction yeast, Rhodosporidium toruloides. First, we show successful isoprenol production using the IPP-bypass pathways most successful in laboratory strains of E. coli and S. cerevisiae. Next, we demonstrate that increased flux through the mevalonate pathway only modestly increases isoprenol titers. Using proteomics, we identified a potential bottleneck in production at the final step in the IPP-bypass pathway and explored alternative enzymes for this step. Finally, the top three strains of R. toruloides were evaluated in sorghum hydrolysates generated using cholinium lysinate. Through this work, 93.1 mg/L of isoprenol was produced in mock medium and 27.3 mg/L in sorghum hydrolysates.

conclusionTogether these results lay the foundation for future work for the production of isoprenol from bioproduction crops.

Indexed as

Advanced aviation fuelIPP-bypass pathwayIsoprenolPhosphataseRhodosporidium toruloides

Identifiers

PMID41776677
PMCPMC13063562

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.