Evidence map›Paper›PMID 41773245›Full record

ArticleJournal of biomedical optics2026

DNA-hybridization on gold nanospheres: a dual-fluorescence investigation of surface loading and strand length effects.

Daria Stoia, Ana-Maria Craciun, Gabriela Chereches, Olga Soritau, Dana Maniu, Simion Astilean, Marc Lamy de la Chapelle, Monica Focsan

Abstract read
In one paragraph

Article in Journal of biomedical optics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Daria StoiaBabes-Bolyai University, Interdisciplinary Research Institute in Bio-Nano-Sciences, Nanobiophotonics and Laser Microspectroscopy Center, Cluj-Napoca, Romania.
Ana-Maria CraciunBabes-Bolyai University, Interdisciplinary Research Institute in Bio-Nano-Sciences, Nanobiophotonics and Laser Microspectroscopy Center, Cluj-Napoca, Romania.ORCID https://orcid.org/0000-0002-6561-0972
Gabriela CherechesOncology Institute Prof. Dr. Ion Chiricuta, Department of Radiobiology and Tumor Biology, Cluj-Napoca, Romania.
Olga SoritauOncology Institute Prof. Dr. Ion Chiricuta, Department of Radiobiology and Tumor Biology, Cluj-Napoca, Romania.
Dana ManiuBabes-Bolyai University, Biomolecular Physics Department, Faculty of Physics, Cluj-Napoca, Romania.ORCID https://orcid.org/0000-0002-3759-6544
Simion AstileanBabes-Bolyai University, Interdisciplinary Research Institute in Bio-Nano-Sciences, Nanobiophotonics and Laser Microspectroscopy Center, Cluj-Napoca, Romania.
Marc Lamy de la ChapelleUniversité du Mans, Institut des Molécules et Matériaux du Mans (IMMM - UMR6283), Le Mans, France.ORCID https://orcid.org/0000-0002-3040-4810
Monica FocsanBabes-Bolyai University, Interdisciplinary Research Institute in Bio-Nano-Sciences, Nanobiophotonics and Laser Microspectroscopy Center, Cluj-Napoca, Romania.ORCID https://orcid.org/0000-0001-6735-5146

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Significance: Gold nanospheres (AuNSs) functionalized with DNA are powerful tools for studying nanoscale biomolecular interactions through fluorescence modulation. Understanding how DNA conformation influences fluorescence is essential for advancing biosensor design. Aim: We examine how DNA strand length and surface loading govern the fluorescence behavior of Cy5-labeled single-stranded DNA (polyA-Cy5) bound to AuNSs and how these properties change upon hybridization with complementary polyT strands. Approach: PolyA-Cy5 strands of different bases were conjugated to AuNSs and analyzed using steady-state and time-resolved fluorescence spectroscopy before and after polyT hybridization. Results: Surface attachment induced strong fluorescence quenching, with intensity varying with strand length due to differences in DNA conformation. Short strands remained rigid and upright, whereas longer strands adopted more flexible geometries. Upon hybridization, longer duplexes exhibited fluorescence enhancement attributed to increased fluorophore-metal spacing as dsDNA becomes more upright. Lifetime measurements supported these conformational changes and suggest a Förster resonance energy transfer (FRET)-based quenching mechanism. Experiments in fetal bovine serum (FBS) confirmed that hybridization-induced enhancement persists in biologically relevant media. Conclusions: The results reveal strand-length and density-dependent conformational dynamics of DNA on AuNSs and establish a robust fluorescence-based method for probing nanoscale assembly. The nanosystem can also be tracked intracellularly, as demonstrated by its detectable signal in fluorescence imaging.

Indexed as

DNAGoldMetal NanoparticlesNanospheresNucleic Acid HybridizationCarbocyaninesDNA, Single-StrandedFluorescence Resonance Energy TransferFluorescent DyesNucleic Acid ConformationSpectrometry, FluorescenceCarbocyaninescyanine dye 5DNADNA, Single-StrandedFluorescent DyesGoldconformational changesDNA hybridizationdye-labeled single-strand DNAfluorescencegold nanospheresstrand length

Identifiers

PMID41773245
PMCPMC12949946

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.