Evidence map›Paper›PMID 41772442›Full record

ArticleBMC genomics2026

Development and application of a genotyping by target sequencing single-nucleotide polymorphism array panel in Salix suchowensis.

Yu Han, Shaobo Gu, Mingjia Zhu, Wei Liu, Landi Feng, Tongming Yin, Xuemeng Gao, Yanjun Zan, Rui Huang, Yan Ji and 1 more

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Article in BMC genomics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yu Han *College of Life Sciences, Sichuan University, Chengdu, China.
Shaobo Gu *College of Life Sciences, Sichuan University, Chengdu, China.
Mingjia ZhuState Key Laboratory of Herbage Innovation and Grassland Agro-Ecosystem, College of Ecology, Lanzhou University, Lanzhou, China.
Wei LiuCollege of Life Sciences, Sichuan University, Chengdu, China.
Landi FengCollege of Life Sciences, Sichuan University, Chengdu, China.
Tongming YinThe Key Laboratory of Tree Genetics and Biotechnology of Jiangsu Province and Education, Department of China, Nanjing Forestry University, Nanjing, China.
Xuemeng GaoCollege of Life Sciences, Sichuan University, Chengdu, China.
Yanjun ZanDepartment of Plant Physiology, Umeå Plant Science Center, Integrated Science Lab, Umeå University, Umeå, Sweden.
Rui HuangTrine University, Angola, IN, USA.
Yan JiDepartment of Plant Physiology, Umeå Plant Science Center, Integrated Science Lab, Umeå University, Umeå, Sweden. jiyan@caas.cn.
Jianquan LiuState Key Laboratory of Herbage Innovation and Grassland Agro-Ecosystem, College of Ecology, Lanzhou University, Lanzhou, China. liujq@nwipb.ac.cn.

Funding

National Key Research and Development Program of China 2021YFD2200202
6 · The paper itself

Abstract

Salix suchowensis is an important species of Salix, known for its rapid growth property and wide application in environmental construction, ecological restoration, wicker production, and biomass energy production. Due to its significance as a sustainable biological resource, S. suchowensis has been the centre of intensive breeding. However, rapid improvement of growth and biomass has been hindered by a lack of genomic resources. To address this limitation, we designed a liquid-phase probe array by genotyping by target sequencing technology. Using whole-genome resequencing data, a total of 39,076 SNPs were selected for the array panel, consisting of trait-associated SNPs, intragenic SNPs, and intergenic SNPs. This panel was validated by genotyping 550 new samples, demonstrating high call rates and effective capture of the population structure. Genome-wide association analysis identified 72 SNPs associated with plant height and ground diameter. Additionally, the array panel shows a high potential for genomic selection, with high prediction accuracy for various traits. These results highlight the efficiency of this panel in capturing genomic variations that are highly valuable for future genetic research and breeding applications.

Indexed as

Genotyping TechniquesPolymorphism, Single NucleotideSalixGenome, PlantGenome-Wide Association StudyGenomicsGenotypeOligonucleotide Array Sequence AnalysisPhenotypeGenome-wide association studyGenomic selectionGround diameterLiquid-phase probe arrayPlant height

Identifiers

PMID41772442
PMCPMC13059534

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.