Evidence map›Paper›PMID 41770176›Full record

ArticleGastroenterology2026

Targeting APE1-Redox Function Reverses SOX9-mediated Chemoresistance in Esophageal Adenocarcinoma.

Heng Lu, Farah Ballout, Lei Chen, Dunfa Peng, Zheng Chen, Mohammed Soutto, Longlong Cao, Krishnapriya Thangaretnam, Ravindran Caspa Gokulan, Timothy C Wang and 9 more

Abstract read
In one paragraph

Article in Gastroenterology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Heng LuDepartment of Surgery, Miller School of Medicine, University of Miami, Miami, Florida; Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, Florida. Electronic address: heng.lu@med.miami.edu.
Farah BalloutDepartment of Surgery, Miller School of Medicine, University of Miami, Miami, Florida.
Lei ChenDepartment of Surgery, Miller School of Medicine, University of Miami, Miami, Florida.
Dunfa PengDepartment of Surgery, Miller School of Medicine, University of Miami, Miami, Florida; Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, Florida.
Zheng ChenDepartment of Surgery, Miller School of Medicine, University of Miami, Miami, Florida; Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, Florida.
Mohammed SouttoDepartment of Surgery, Miller School of Medicine, University of Miami, Miami, Florida; Department of Veterans Affairs, Miami Healthcare System, Miami, Florida.
Longlong CaoDepartment of Gastric Surgery, Fujian Medical University Union Hospital, Fuzhou, China.
Krishnapriya ThangaretnamDepartment of Surgery, Miller School of Medicine, University of Miami, Miami, Florida.
Ravindran Caspa GokulanDepartment of Surgery, Miller School of Medicine, University of Miami, Miami, Florida.
Timothy C WangDivision of Digestive and Liver Diseases and Center for Human Development, Department of Medicine, Columbia University, New York, New York.
Jianwen QueDivision of Digestive and Liver Diseases and Center for Human Development, Department of Medicine, Columbia University, New York, New York.
Silvia GiordanoDepartment of Oncology, University of Torino and Candiolo Cancer Institute, Candiolo, Italy.
Mary Kay WashingtonDepartment of Pathology, Vanderbilt University Medical Center, Nashville, Tennessee.
Xi Steven ChenSylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, Florida; Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, Florida.
Xiaodian SunSylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, Florida; Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, Florida.
Yuguang BanSylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, Florida; Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, Florida.
Oliver Gene McDonaldSylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, Florida; Department of Pathology and Laboratory Medicine, Miller School of Medicine, University of Miami, Miami, Florida.
Alexander ZaikaDepartment of Surgery, Miller School of Medicine, University of Miami, Miami, Florida; Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, Florida; Department of Veterans Affairs, Miami Healthcare System, Miami, Florida.
Wael El-RifaiDepartment of Surgery, Miller School of Medicine, University of Miami, Miami, Florida; Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, Florida; Department of Veterans Affairs, Miami Healthcare System, Miami, Florida. Electronic address: wxe45@miami.edu.

Funding

Tumor Biology Research ProgramP30CA240139 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Stephen D. Nimer · 2019 to 2026
$24.1M
SOX4-Mediated Transcription Program in Esophageal AdenocarcinomaP01CA268991 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI WAEL EL-RIFAI · 2022 to 2026
$9.2M
Molecular Functions of CDK1 in Gastric TumorigenesisR01CA249949 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI EL-RIFAI, WAEL · 2021 to 2025
$2.3M
The Molecular Functions of APE1 in Barrett's TumorigenesisR01CA206563 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI EL-RIFAI, WAEL · 2015 to 2020
$2.2M
Intercepting novel functions of AURKA in gastric tumorigenesisR01CA266528 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI EL-RIFAI, WAEL · 2022 to 2025
$2.2M
The role of NRF2 in reflux-induced esophageal adenocarcinomasR01CA224366 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI EL-RIFAI, WAEL · 2018 to 2022
$1.7M
BLRD VA I01 BX001179BLRD VA IK6 BX003787NCI NIH HHS P01 CA268991NCI NIH HHS P30 CA240139NCI NIH HHS R01 CA206563NCI NIH HHS R01 CA224366NCI NIH HHS R01 CA249949NCI NIH HHS R01 CA266528ORD VA I01 RD001338
6 · The paper itself

Abstract

BACKGROUND &

aimsGastroesophageal reflux disease is the leading risk factor for esophageal adenocarcinoma (EAC), a malignancy that exhibits marked resistance to chemotherapy and results in poor clinical outcomes. This study aims to define and overcome the mechanisms underlying chemoresistance in EAC to enable the development of novel therapeutic strategies.

methodsThe study included analysis of RNA sequencing and public datasets. Experimental models consisted of 3-dimensional organotypic cultures, tumorospheres, patient-derived organoids, and de-identified tissue microarrays. In vivo experiments utilized the pL2-IL1β, Krt7CreER;R26rtTA;otet-CDX2, and patient-derived xenograft mouse models.

resultsRNA sequencing revealed a significant enrichment of the SRY-Box Transcription Factor 9 (SOX9) molecular signature in patients with EAC. We identified an apurinic/apyrimidinic endonuclease (APE1)-dependent mechanism that activates SOX9 signaling on exposure to acidic bile salts, mimicking reflux conditions. Genetic knockdown or pharmacological inhibition of APE1's redox activity suppressed SOX9 activation under both reflux-mimicking conditions and oxaliplatin treatment. The redox function of APE1 was required to stabilize the SOX9 protein. Immunostaining demonstrated co-overexpression of APE1 and SOX9 in mouse and human EAC lesions, accompanied by Aldehyde Dehydrogenase 1 Family Member A1 expression, a SOX9 transcriptional target implicated in chemotherapeutic resistance. Clinically, patients with high SOX9 signature expression had significantly worse relapse-free survival. Moreover, in vivo treatment with the APE1-redox-specific inhibitor APX2009 enhanced the response of patient-derived xenograft tumors to oxaliplatin by downregulating SOX9.

conclusionsActivation of SOX9 through the APE1-redox function is a key driver of EAC chemoresistance. Targeting APE1's redox activity offers a promising therapeutic strategy to overcome resistance by inhibiting the otherwise "undruggable" SOX9 transcription network.

Indexed as

AdenocarcinomaDNA-(Apurinic or Apyrimidinic Site) LyaseDrug Resistance, NeoplasmEsophageal NeoplasmsSOX9 Transcription FactorAnimalsAntineoplastic AgentsCell Line, TumorGene Expression Regulation, NeoplasticHumansMiceOxaliplatinOxidation-ReductionSignal TransductionXenograft Model Antitumor AssaysAntineoplastic AgentsAPEX1 protein, humanDNA-(Apurinic or Apyrimidinic Site) LyaseOxaliplatinSOX9 protein, humanSox9 protein, mouseSOX9 Transcription FactorAPE-1/Ref-1Barrett’s EsophagusChemoresistanceRedoxRefluxSOX9

Identifiers

PMID41770176
PMCPMC13008281

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.