Evidence map›Paper›PMID 41764718›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2026

Identification of immunodominant T cell epitopes in SARS-CoV-2 spike protein in Syrian hamsters.

Nadia Soudani, John Sidney, Ricardo Da Silva Antunes, James Brett Case, Ruby Sharma, Isabella Brew, Michael S Diamond, Teresa P Dilorenzo, Ali H Ellebedy, Alessandro Sette and 1 more

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Nadia SoudaniDepartment of Medicine, Washington University School of Medicine in St. Louis, St. Louis, MO, United States.
John SidneyCenter for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, United States.
Ricardo Da Silva AntunesCenter for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, United States.ORCID 0000-0001-9785-5272
James Brett CaseDepartment of Medicine, Washington University School of Medicine in St. Louis, St. Louis, MO, United States.
Ruby SharmaDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY, United States.
Isabella BrewDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY, United States.
Michael S DiamondDepartment of Medicine, Washington University School of Medicine in St. Louis, St. Louis, MO, United States.
Teresa P DilorenzoDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY, United States.ORCID 0000-0003-4337-3598
Ali H EllebedyDepartment of Pathology and Immunology, Washington University School of Medicine in St. Louis, St. Louis, MO, United States.
Alessandro SetteCenter for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, United States.
Adrianus C M BoonDepartment of Medicine, Washington University School of Medicine in St. Louis, St. Louis, MO, United States.ORCID 0000-0002-4700-8224

Funding

NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00016 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI WEBBY, RICHARD · 2021 to 2025
$91.4M
The Development and Evaluation of Pan-Coronavirus VaccinesP01AI168347 · NIAID · WASHINGTON UNIVERSITY · PI Michael S Diamond · 2022 to 2026
$15.9M
Syrian hamsters as an animal model for influenza virus researchR01AI150678 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI KAWAOKA, YOSHIHIRO · 2020 to 2023
$3.0M
Transmission of CoV-2 and the Impact of Spike Protein EvolutionR01AI169022 · NIAID · WASHINGTON UNIVERSITY · PI Adrianus CM Boon · 2023 to 2026
$2.3M
National Institute of Health (NIAID Center of Excellence for Influenza Research and Response (CEIRR)) P01AI168347NIAID NIH HHS 75N93021C00016NIAID NIH HHS P01 AI168347NIAID NIH HHS R01 AI150678NIAID NIH HHS R01 AI169022NIH HHS 75N93021C00016
6 · The paper itself

Abstract

T cell immunity has a crucial role in vaccine-induced protection against respiratory viruses, yet a detailed characterization of T cell responses and epitopes in Syrian hamsters, a highly utilized preclinical, small animal model for SARS-CoV-2 research, is lacking. In this study, using an intranasal Chimpanzee adenoviral vectored vaccine (ChAd-SARS-CoV-2-S), we characterized the T cell response to the spike protein of SARS-CoV-2 in Syrian hamsters and identified immunogenic CD4+ and CD8+ T cell epitopes using IFN-γ ELISpot assays and cell depletions. The mucosal ChAd-SARS-CoV-2-S vaccine elicited strong T cell responses, with evidence of CD4+ and CD8+ T cell activation in both lymphoid and mucosal tissues. Responses were directed toward the non-receptor-binding domain regions of the spike protein, indicating that dominant T cell epitopes for hamsters reside elsewhere in this structural protein. Six different T cell epitopes (4 for CD4 and 2 for CD8) were identified in the spike protein, and epitope-specific responses were detected in hamsters from 2 vendors, suggesting genetic similarity in terms of major histocompatibility complex allele expression. Identifying T cell epitopes and characterizing T cell responses in lymphoid and mucosal compartments enhances the utility of Syrian hamsters as a preclinical model for SARS-CoV-2 vaccine studies.

Indexed as

CD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCOVID-19COVID-19 VaccinesEpitopes, T-LymphocyteImmunodominant EpitopesSARS-CoV-2Spike Glycoprotein, CoronavirusAnimalsCricetinaeMesocricetusCOVID-19 VaccinesEpitopes, T-LymphocyteImmunodominant EpitopesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2interferon-gammaSARS-CoV-2Syrian hamstersT cell epitopesT cells

Identifiers

PMID41764718
PMCPMC13267014

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.