Evidence map›Paper›PMID 41764180›Full record

ArticleNature communications2026

Computation and resource efficient genome-wide association analysis for large-scale imaging studies.

Zhiwen Jiang, Jason Stein, Tengfei Li, Ethan Fang, Yun Li, Patrick Sullivan, Hongtu Zhu

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. A spatially resolved genomic-molecular atlas of human white-matter microstructure.medRxiv : the preprint server for health sciences · 2026
    Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Zhiwen JiangDepartment of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0001-8841-618X
Jason SteinDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0003-4829-0513
Tengfei LiDepartment of Radiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0001-6142-3865
Ethan FangDepartment of Biostatistics and Bioinformatics, Duke University, Durham, NC, USA.
Yun LiDepartment of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0002-9275-4189
Patrick SullivanDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0002-6619-873X
Hongtu ZhuDepartment of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. htzhu@email.unc.edu.ORCID http://orcid.org/0000-0002-6781-2690

Funding

Preclinical CoreP50HD103573 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Mark D Shen · 2020 to 2026
$9.7M
Beyond GWAS: High Throughput Functional Genomics & Epigenome Editing to Elucidate the Effects of Genetic Associations for SchizophreniaR01MH125236 · NIMH · DUKE UNIVERSITY · PI CRAWFORD, GREGORY E, GERSBACH, CHARLES A. · 2021 to 2025
$8.1M
Polygenic risk scores for cardiometabolic disorders: the role of blood cells immune response and evolutionary adaptationU01HG011720 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Yun Li, ALEXANDER P REINER · 2021 to 2026
$5.4M
Construction and Application of Comprehensive Knowledge Graphs for Alzheimer's DiseaseR01AG085581 · NIA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Yun Li, Hongtu Zhu · 2024 to 2026
$3.7M
Mapping the Causal Genetic-Imaging-Clinical Pathway for Alzheimer's DiseaseRF1AG082938 · NIA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Bingxin Zhao, Hongtu Zhu · 2023 to 2026
$3.6M
AD GxE: In vivo and in vitro modeling of gene x environment interactionsU01AG088667 · NIA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Jason Louis Stein · 2024 to 2026
$2.2M
Shared neural basis and genetic architecture of psychiatric disordersR01MH136055 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI Bingxin Zhao · 2025 to 2026
$1.3M
Infant Cognitive Growth Prediction via Centile-based Brain Development and Meta MatchingR21HD120911 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, TENGFEI · 2025 to 2025
$414k
Tracking brain structural trajectories for early detection and prognosis of Alzheimer's DiseaseK01AG095286 · NIA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Tengfei Li · 2025 to 2026
$282k
Center for Hierarchical Manufacturing, National Science Foundation (Center for Hierarchical Manufacturing) DMS-2434666NIA NIH HHS K01 AG095286NIA NIH HHS RF1 AG082938NICHD NIH HHS R21 HD120911U.S. Department of Health & Human Services | National Institutes of Health (NIH) 1U01AG088667-01U.S. Department of Health & Human Services | National Institutes of Health (NIH) K01AG095286U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01MH125236U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01MH136055U.S. Department of Health & Human Services | National Institutes of Health (NIH) R21HD120911U.S. Department of Health & Human Services | National Institutes of Health (NIH) U01HG011720U.S. Department of Health & Human Services | NIH | Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) P50HD103573U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) R01AG085581U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) R01AG098697U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) RF1AG082938U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) U01AG088667
6 · The paper itself

Abstract

Imaging genetics links genetic variations to brain structures and functions, but the computational challenges posed by high-dimensional imaging and genetic data are significant. In voxel-level genome-wide association studies, we introduce a Representation learning-based Voxel-level Genetic Analysis (RVGA) framework that reduces computational time and storage burden by over 200 times. RVGA enhances statistical power by denoising images and shares minimal datasets of summary statistics for associations across the whole genome of the entire image for secondary analyses. Additionally, it introduces a unified estimator for voxel heritability, genetic correlations between voxels, and cross-trait genetic correlations between voxels and non-imaging phenotypes. Applying RVGA to hippocampus shape and white matter microstructure in the UK Biobank (n = 53,454) reveals 39 and 275 novel loci, respectively. We identify heterogeneity in heritability within images and subregions that share genetic bases with 14 brain-related phenotypes, such as the genetic correlation between the hippocampus and educational attainment, and between the anterior corona radiata and schizophrenia. RVGA replicates known genetic associations and uncovers new discoveries.

Indexed as

Genome-Wide Association StudyBrainHippocampusHumansMagnetic Resonance ImagingPhenotypePolymorphism, Single NucleotideSchizophreniaUK BiobankWhite Matter

Identifiers

PMID41764180
PMCPMC13066023

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.