Evidence map›Paper›PMID 41763255›Full record

ReviewPlant physiology2026

Twenty-five years of photobodies: formation, composition, and the 2-compartment logic of phytochrome B signaling.

Juan Du, De Fan, Jiangman He, Meng Chen

Abstract readReview
In one paragraph

Review in Plant physiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Juan DuDepartment of Botany and Plant Sciences, Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, United States.ORCID 0000-0003-0192-6633
De FanDepartment of Botany and Plant Sciences, Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, United States.ORCID 0009-0001-9154-8949
Jiangman HeDepartment of Botany and Plant Sciences, Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, United States.ORCID 0000-0002-6535-1544
Meng ChenDepartment of Botany and Plant Sciences, Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, United States.ORCID 0000-0003-0351-5897

Funding

Genetic Characterization of Phytochrome Nuclear Bodies in Plant Light SignalingR01GM087388 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI CHEN, MENG · 2010 to 2023
$5.8M
Mechanism of nucleus-to-plastid light signaling in controlling plastid transcriptionR01GM132765 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI Meng Chen · 2020 to 2026
$2.3M
National Science Foundation MCB-2141560NIH HHS R01GM087388NIH HHS R01GM132765
6 · The paper itself

Abstract

How nuclear condensates encode cell-signaling dynamics remains unclear. Photobodies (PBs) in Arabidopsis offer a genetically tractable paradigm. PBs are light- and temperature-sensing nuclear condensates organized by the thermosensitive photoreceptor phytochrome B (phyB). Recent advances have clarified PB composition and illuminated PB formation and function. phyB is the dominant component and provides scaffold-like determinants that recruit selective signaling partners as primary clients (direct phyB binders) and secondary clients (recruited via primaries), spanning transcription/splicing regulators, E3-ligase components, kinases/phosphatases, and chaperones. These clients connect phyB condensates to diverse environmental and hormonal pathways, positioning PBs as a central hub for signaling integration. PB assembly is driven by condensation encoded in phyB's output module and modulated by its photosensory module, coupling assembly/dissolution to photostate and temperature. PBs nucleate nonrandomly at preferred seeding sites, producing spatially distinct classes with different occurrence frequencies and thermosensitivities. PB formation partitions signaling between PBs and the surrounding nucleoplasm, establishing a 2-compartment photosensory system. Within this architecture, dynamic sequestration in PBs tunes nucleoplasmic transcription factor stability and activity to expand signaling dynamic range and extends phyB control into the night by stabilizing active phyB. We propose that PBs function as an autoregulatory rheostat, dialing nucleoplasmic light sensitivity in proportion to incident irradiance and thereby enabling continuous discrimination of light-intensity changes across multiple orders of magnitude. We suggest that this 2-compartment logic illustrates a general role of membraneless organelles in signaling: using dense-phase dynamics to adjust pathway sensitivity and output in the surrounding dilute phase.

Indexed as

ArabidopsisArabidopsis ProteinsPhytochrome BSignal TransductionCell NucleusLightArabidopsis ProteinsPHYB protein, ArabidopsisPhytochrome B

Identifiers

PMID41763255
PMCPMC13276271

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.