Evidence map›Paper›PMID 41761743›Full record

ArticleCancer2026

Multiomic characterization of small cell lung cancer: Real-world insights into therapeutic opportunities.

Sonam Puri, Andrew Elliott, Abdul Rafeh Naqash, Hassan Abu Shukair, Kathleen C Kerrigan, Shiven Patel, Andreas Seeber, Florian Kocher, Dipesh Uprety, Hirva Mamdani and 9 more

Abstract read
In one paragraph

Article in Cancer, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Sonam PuriDepartment of Thoracic Oncology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.ORCID https://orcid.org/0000-0001-8068-5051
Andrew ElliottCaris Life Sciences, Phoenix, Arizona, USA.
Abdul Rafeh NaqashStephenson Cancer Center, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.
Hassan Abu ShukairStephenson Cancer Center, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.
Kathleen C KerriganUniversity of Utah, Salt Lake City, Utah, USA.ORCID https://orcid.org/0000-0001-9144-8342
Shiven PatelUniversity of Utah, Salt Lake City, Utah, USA.
Andreas SeeberDepartment of Hematology and Oncology, Comprehensive Cancer Center Innsbruck, Medical University of Innsbruck, Innsbruck, Austria.
Florian KocherDepartment of Hematology and Oncology, Comprehensive Cancer Center Innsbruck, Medical University of Innsbruck, Innsbruck, Austria.
Dipesh UpretyWayne State University, Detroit, Michigan, USA.ORCID https://orcid.org/0000-0002-4278-9703
Hirva MamdaniWayne State University, Detroit, Michigan, USA.ORCID https://orcid.org/0000-0003-3874-8703
Amit A KulkarniCity of Hope Cancer Center, Phoenix, Arizona, USA.
Gilberto LopesUniversity of Miami, Miami, Florida, USA.
Balazs HalmosMontefiore Medical Center, Bronx, New York, USA.ORCID https://orcid.org/0000-0001-7548-8360
Hossein BorghaeiFox Chase Cancer Center, Philadelphia, Pennsylvania, USA.ORCID https://orcid.org/0000-0002-2577-4454
Wallace AkerleyUniversity of Utah, Salt Lake City, Utah, USA.
Gabriel L SicaUniversity of Pittsburgh, Pittsburg, Pennsylvania, USA.
Stephen V LiuLombardi Comprehensive Cancer Center, Georgetown University, Washington, DC, USA.
Trudy G OliverDepartment of Pharmacology and Cancer Biology, Duke University, Durham, North Carolina, USA.
Taofeek K OwonikokoUniversity of Maryland School of Medicine, Marlene and Stewart Greenebaum Comprehensive Cancer Center, Baltimore, Maryland, USA.ORCID https://orcid.org/0000-0002-7724-7728

Funding

NCI NIH HHS 5P30CA134274-18NCI NIH HHS R01 CA273216-01NCI NIH HHS U01-CA231844NCI NIH HHS U24-CA213274
6 · The paper itself

Abstract

backgroundThe dominant expression of lineage-related transcription factors (TFs)-ASCL1, NEUROD1, POU2F3, and, controversially, YAP1-has enabled the classification of small cell lung cancer (SCLC) into distinct subtypes (SCLC-A/N/P/Y, respectively). Emerging evidence suggests that a T cell-inflamed phenotype characterizes an SCLC subset. A large-scale multiomic analysis of samples from real-world patients with SCLC was conducted to examine the expression of clinically relevant biomarkers across SCLC subtypes.

methodsComprehensive molecular profiling of patient samples (N = 944) was performed via next-generation DNA sequencing (592-gene panel or whole exome), RNA sequencing (whole transcriptome), and immunohistochemistry. Tumors were stratified on the basis of the dominant expression of an individual TF (SCLC-A/N/Y/P subtypes), coexpression of multiple TFs (mixed), or low expression of all four TFs (TF-) for characterization of immune-related gene signatures (T-cell inflamed, natural killer cell, and Stimulator of Interferon Genes pathway) and clinically relevant target genes.

resultsThe cohort was composed of 25.6% SCLC-A, 10.2% SCLC-N, 12.5% SCLC-Y, 4.3% SCLC-P, 19.5% SCLC TF-, and 27.9% mixed subtypes. The SCLC-Y subtype exhibited the highest expression of immune-related gene signatures, with comparable expression observed in mixed samples expressing YAP1. Additionally, expression of clinically relevant target genes found in SCLC-A (DLL3, SEZ6, and BCL2) and SCLC-N (SSTR2) was increased in mixed samples expressing ASCL1 and NEUROD1. The TF- subtype was not associated with increased immune-related signatures or other target genes.

conclusionsThis large-scale multiomic analysis revealed significant associations between SCLC subtypes and specific immune signatures and comutations. These findings provide insights into the molecular heterogeneity of SCLC, and highlight potential biomarkers for targeted therapies.

Indexed as

Biomarkers, TumorLung NeoplasmsSmall Cell Lung CarcinomaBasic Helix-Loop-Helix ProteinsFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMultiomicsTranscription FactorsTranscriptomeYAP-Signaling ProteinsASCL1 protein, humanBasic Helix-Loop-Helix ProteinsBiomarkers, TumorNEUROD1 protein, humanTranscription FactorsYAP-Signaling Proteinsbiomarkerssmall cell lung cancersubtypestranscriptomics

Identifiers

PMID41761743
PMCPMC12949428

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.