Evidence map›Paper›PMID 41758156›Full record

ArticlePacific Symposium on Biocomputing. Pacific Symposium on Biocomputing2026

Asking the Right Questions: Benchmarking Large Language Models in the Development of Clinical Consultation Templates.

Liam G McCoy, David Wu, Sarita Khemani, Saloni Kumar Maharaj, Arth Pahwa, Leah Rosengaus, Lena Giang, Olivia Jee, Ethan Goh, Fateme Nateghi Haredasht and 8 more

Abstract read
In one paragraph

Article in Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Liam G McCoyDivision of Neurology, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, AB, Canada2Department of Medicine, Beth Israel Deaconess Medical Center, Boston, MA, USA, lmccoy@ualberta.ca.
David WuDepartment of Dermatology, Mass General Brigham, Harvard Medical School, Boston, MA, USA, dwu@mgh.harvard.edu.
Sarita KhemaniDivision of Hospital Medicine, Stanford University School of Medicine, Stanford, CA, USA, skhemani@stanford.edu.
Saloni Kumar MaharajDivision of Hospital Medicine, Stanford University School of Medicine, Stanford, CA, USA, salonikumar@stanford.edu.
Arth PahwaDivision of Neurology, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, AB, Canada, apahwa@ualberta.ca.
Leah RosengausStanford Health Care, Stanford Medicine, Palo Alto, CA, USA, LRosengaus@stanfordhealthcare.org.
Lena GiangStanford Health Care, Stanford Medicine, Palo Alto, CA, USA, LGiang@stanfordhealthcare.org.
Olivia JeeDivision of Primary Care and Population Health, Stanford University School of Medicine, Palo Alto, CA, USA, ojee@stanford.edu.
Ethan GohStanford Center for Biomedical Informatics Research Clinical Excellence Research Center, Stanford School of Medicine, Stanford, CA, USA, ethangoh@stanford.edu.
Fateme Nateghi HaredashtStanford Center for Biomedical Informatics Research Stanford, CA, USA, fnateghi@stanford.edu.
Kanav ChopraStanford Center for Biomedical Informatics Research Stanford, CA, USA, kanav@stanford.edu.
David Jh Wu0Department of Radiation Oncology, Stanford Cancer Center, Palo Alto, CA, USA, davidjwu@stanford.edu.
Abass Conteh0Department of Radiation Oncology, Stanford Cancer Center, Palo Alto, CA, USA, aconteh@stanford.edu.
Vishnu Ravi1Stanford Mussallem Center for Biodesign, Stanford University, USA12Stanford University School of Medicine, Stanford, CA, USA, vishnur@stanford.edu.
Yingjie Weng3Quantitative Sciences Unit, Stanford University School of Medicine, Stanford, CA, USA, yweng7@stanford.edu.
Kelvin Zhenghao Li4Department of Ophthalmology, Stanford Byers Eye Institute, Palo Alto, CA, USA15 Department of Ophthalmology, Tan Tock Seng Hospital, Singapore16Centre of AI in Medicine, Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, kelvinli@stanford.edu.
Daniel Shirvani7Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada, dshirv@student.ubc.ca.
Jonathan H Chen8Stanford Center for Biomedical Informatics Research Division of Hospital Medicine, Stanford School of Medicine, Stanford, CA, USA19 Clinical Excellence Research Center, Stanford School of Medicine, Stanford, CA, USA20Department of Medicine, Stanford University, Stanford, CA, USA, jonc101@stanford.edu.

Funding

Measuring and Predicting Appropriate Antibiotic Use to Combat Resistant BacteriaR01AI178121 · NIAID · STANFORD UNIVERSITY · PI JONATHAN H. CHEN · 2023 to 2026
$3.1M
NIAID NIH HHS R01 AI178121
6 · The paper itself

Abstract

This study evaluates the capacity of large language models (LLMs) to generate structured clinical consultation templates for electronic consultation. Using 145 expert-crafted templates developed and routinely used by Stanford's eConsult team, we assess frontier models-including o3, GPT-4o, Kimi K2, Claude 4 Sonnet, Llama 3 70B, and Gemini 2.5 Pro-for their ability to produce clinically coherent, concise, and prioritized clinical question schemas. Through a multi-agent pipeline combining prompt optimization, semantic autograding, and prioritization analysis, we show that while models like o3 achieve high comprehensiveness (up to 92.2%), they consistently generate excessively long templates and fail to correctly prioritize the most clinically important questions under length constraints. Performance varies across specialties, with significant degradation in narrative-driven fields such as psychiatry and pain medicine. Our findings demonstrate that LLMs can enhance structured clinical information exchange between physicians, while highlighting the need for more robust evaluation methods that capture a model's ability to prioritize clinically salient information within the time constraints of real-world physician communication. Limitations include reliance on Stanford-specific templates and concordancebased grading, which may not capture all clinically reasonable outputs.

Indexed as

Large Language ModelsReferral and ConsultationBenchmarkingComputational BiologyElectronic Health RecordsHumans

Identifiers

PMID41758156
PMCPMC13138846

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.