Evidence map›Paper›PMID 41756564›Full record

ArticleNAR genomics and bioinformatics2026

Recurrence plot reconstruction reveals chromosomal reorganization before territory formation.

Yuki Kitanishi, Hiroki Sugishita, Yukiko Gotoh, Yoshito Hirata

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in NAR genomics and bioinformatics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yuki KitanishiGraduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.ORCID https://orcid.org/0000-0001-8153-8176
Hiroki SugishitaGraduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
Yukiko GotohGraduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
Yoshito HirataInstitute of Systems and Information Engineering, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8573, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromatin conformation capture methods such as Hi-C have improved understanding of nuclear architecture. However, reconstruction from single-cell Hi-C (scHi-C) data is challenging due to limited DNA contacts per cell. We have previously developed the recurrence plot-based reconstruction (RPR) method for reconstructing three-dimensional (3D) genomic structure from Hi-C data even from low-coverage DNA contact information. Here we used the RPR method to analyze scHi-C data derived from early-stage F

Indexed as

ChromatinChromosomesAnimalsEmbryonic DevelopmentSingle-Cell AnalysisChromatin

Identifiers

PMID41756564
PMCPMC12932954

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.