Evidence map›Paper›PMID 41756438›Full record

ArticleResearch square2026

Large Language Models in Infectious Diseases: A Systemic Review.

Alon Gorenshtein, Eyal Klang, Jacob J Smith, Richard Dzeng, Mark C Poznansky, Girish N Nadkarni, Mahmud Omar

Abstract readPreprint
In one paragraph

Article in Research square, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alon GorenshteinDepartment of Neurology, Harvard Medical School, Boston, MA.ORCID 0009-0000-7542-8608
Eyal KlangThe Windreich Department of Artificial Intelligence and Human Health, Mount Sinai Medical Center, NY, USA.ORCID 0000-0002-4567-3108
Jacob J SmithVaccine and Immunotherapy Center, Massachusetts General Hospital, Boston, MA 02129, USA.
Richard DzengVaccine and Immunotherapy Center, Massachusetts General Hospital, Boston, MA 02129, USA.
Mark C PoznanskyVaccine and Immunotherapy Center, Massachusetts General Hospital, Boston, MA 02129, USA.
Girish N NadkarniThe Windreich Department of Artificial Intelligence and Human Health, Mount Sinai Medical Center, NY, USA.ORCID 0000-0001-6319-4314
Mahmud OmarThe Windreich Department of Artificial Intelligence and Human Health, Mount Sinai Medical Center, NY, USA.ORCID 0009-0001-0438-0827

Funding

Conduits: Mount Sinai Health System Translational Science HubUL1TR004419 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Rosalind J Wright · 2022 to 2026
$46.4M
COVID and Translational Science supercomputer (CATS)S10OD030463 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2021 to 2021
$2.0M
Big Omics Data Engine 2 SupercomputerS10OD026880 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2019 to 2019
$2.0M
NCATS NIH HHS UL1 TR004419NIH HHS S10 OD026880NIH HHS S10 OD030463
6 · The paper itself

Abstract

Background: Clinical reasoning in infectious diseases relies on validated evidence. LLMs are being introduced into diagnosis, antimicrobial stewardship, and guideline interpretation before their safety and reliability are established. Methods: This review, registered in PROSPERO (CRD420251155354), evaluated studies using GPT, Claude, Gemini, and retrieval-augmented or agentic systems for infectious disease decision-making. PubMed, CENTRAL, Scopus, and Web of Science were searched from January 2018 to September 2025. Two reviewers screened and extracted data. Risk of bias was assessed with QUADAS-AI. Findings: Thirty-one studies met inclusion criteria. Most were cross-sectional (61%) and vignette-based (68%). Only 32% used real clinical data; 23% had low risk of bias. Safety issues were reported in 90% of studies: incomplete responses (61%), unsafe advice (23-32%), and fabricated content (32%). In antimicrobial stewardship, agreement with infectious-disease specialists was ~ 50%. Diagnostic sensitivity for structured infections was 80-100%. Retrieval-augmented systems increased specificity from 35% to 75% and reduced hallucinations. Proprietary models outperformed open-source models but did not reach expert accuracy. Interpretation: LLMs perform well in defined diagnostic tasks but remain unreliable for autonomous clinical use. High error rates, inconsistent reasoning, and fabricated content require expert oversight and external validation before deployment.

Indexed as

Antimicrobial stewardshipBias and fairnessClinical decision supportHallucinations (AI)Infectious diseasesLarge language modelsPatient safetyRetrieval-augmented generation

Identifiers

PMID41756438
PMCPMC12934913

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.