Evidence map›Paper›PMID 41755821›Full record

ArticleJACS Au2026

Combined Nudged Elastic Band and Markov State Models Uncover Distinct BAX Activation Pathways by Bim Peptide and a Small Molecule.

Meiling Zhao, Jingyuan Li, Wei Cai, Renxiao Wang, Yan Li

Abstract read
In one paragraph

Article in JACS Au, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Meiling ZhaoDepartment of Medicinal Chemistry, School of Pharmaceutical Sciences, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China.
Jingyuan LiDepartment of Medicinal Chemistry, School of Pharmaceutical Sciences, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China.
Wei CaiDepartment of Medicinal Chemistry, School of Pharmaceutical Sciences, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China.
Renxiao WangDepartment of Medicinal Chemistry, School of Pharmaceutical Sciences, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China.ORCID https://orcid.org/0000-0003-0485-0259
Yan LiDepartment of Medicinal Chemistry, School of Pharmaceutical Sciences, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China.ORCID https://orcid.org/0000-0002-8259-2470

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BAX, a key pro-apoptotic member of the BCL-2 family, represents a promising therapeutic target for overcoming apoptotic resistance in cancer. Although structural and biochemical studies have advanced our understanding, the detailed mechanism of BAX activation remains unresolved. Activation involves dynamic conformational changes, including ligand migration from the trigger site and release of the α9 helix, processes that are challenging to capture with conventional approaches. Here, we combine the NEB method with long-time scale MD simulations to effectively sample intermediate conformations along the BAX activation pathway induced by the Bim peptide or the small molecule

Indexed as

BAX activationcommunity network analysisMarkov state modelminimum free energy pathwaynudged elastic band

Identifiers

PMID41755821
PMCPMC12933365

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.