ArticleMolecular biology and evolution2026
HaploThread: a scalable desktop tool for efficient haplotype network inference and interactive visualization.
Article in Molecular biology and evolution, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
This note introduces HaploThread, a user-friendly desktop software with a graphical user interface designed for constructing and visualizing haplotype networks. Developed in C++ using the Qt library, HaploThread integrates network visualization with multiple multithreaded haplotype construction algorithms-including McAN and fastHaN (which incorporates MSN, MJN, and TCS)-through a modular plugin architecture. It provides an intuitive workflow for building and visualizing haplotype networks from large-scale datasets, while also supporting functional extensions via plugins to facilitate the analysis of genetic variation and evolutionary relationships. HaploThread is released as open-source software under the GNU General Public License. Its source code and precompiled executables for Windows and macOS are freely available at https://ngdc.cncb.ac.cn/biocode/tool/BT007948 and https://github.com/git-xubo/HaploThread.
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