Evidence map›Paper›PMID 41751553›Full record

ArticleGenes2026

Functional Genome Prediction and Genome-Scale Metabolic Modeling of the Rhizobacteria

Cristina Karina Andrade Alvarado, Zoila Felipa Honorio Durand, Sergio Eduardo Contreras-Liza, Gianmarco Castillo, William Andres Guzman Sanchez, Diego Hiroshi Takei-Idiaquez, Julio E Ballen-Gavidia, Carlos I Arbizu, Pedro M Rodriguez-Grados

Abstract read
In one paragraph

Article in Genes, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Cristina Karina Andrade AlvaradoDepartamento de Agronomía, Universidad Nacional José Faustino Sánchez Carrión (UNJFSC), Lima 15136, Peru.
Zoila Felipa Honorio DurandFacultad de Bromatologia y Nutricion, Universidad Nacional Jose Faustino Sanchez Carrion (UNJFSC), Lima 15136, Peru.
Sergio Eduardo Contreras-LizaDepartamento de Agronomía, Universidad Nacional José Faustino Sánchez Carrión (UNJFSC), Lima 15136, Peru.ORCID 0000-0002-6895-4332
Gianmarco CastilloFacultad de Ciencias, Universidad Nacional Jose Faustino Sanchez Carrion (UNJFSC), Lima 15136, Peru.ORCID 0000-0003-0865-5717
William Andres Guzman SanchezFacultad de Ciencias, Universidad Nacional Jose Faustino Sanchez Carrion (UNJFSC), Lima 15136, Peru.
Diego Hiroshi Takei-IdiaquezFacultad de Ciencias, Universidad Nacional Jose Faustino Sanchez Carrion (UNJFSC), Lima 15136, Peru.ORCID 0000-0001-8135-0536
Julio E Ballen-GavidiaFacultad de Ciencias, Universidad Nacional Jose Faustino Sanchez Carrion (UNJFSC), Lima 15136, Peru.
Carlos I ArbizuFacultad de Ingeniería y Ciencias Agrarias, Universidad Nacional Toribio Rodríguez de Mendoza de Amazonas (UNTRM), Amazonas 01001, Peru.ORCID 0000-0002-0769-5672
Pedro M Rodriguez-GradosDepartamento de Agronomía, Universidad Nacional José Faustino Sánchez Carrión (UNJFSC), Lima 15136, Peru.ORCID 0000-0003-4263-4100

Funding

Universidad Nacional Toribo Rodriguez de Mendoza de Amazonas UNTRM-00025446
6 · The paper itself

Abstract

BACKGROUND/

objectives

methodsThe genome of strain UNJFSC002 was obtained from NCBI and annotated using Prokka. Functional genome prediction, phylogenetic reconstruction, and comparative genomics were performed using bioinformatics tools. A GEM model was reconstructed to simulate metabolic fluxes associated with nitrogen fixation, phosphate solubilization, and phytohormone biosynthesis. Computational phenotyping and in silico functional validation were also performed.

resultsThe draft genome (5.19 Mb, GC 55.33%) contained 4792 protein-coding genes, 4 rRNAs, and 81 tRNAs, with 100% completeness. ANI and core genome phylogeny confirmed its taxonomic position within

conclusionsThe genomic approach confirmed that strain UNJFSC002 harbors multiple active genes and metabolic pathways associated with plant growth promotion and environmental resilience.

Indexed as

Genome, BacterialSerratia liquefaciensGenomicsNitrogen FixationPhylogenyRhizospheregenomicsmetabolic and system biologymicrobiologyNGSphenotyping

Identifiers

PMID41751553
PMCPMC12940971

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.