Evidence map›Paper›PMID 41748593›Full record

ArticleScientific data2026

Chromosome-level haplotype-resolved genome assemblies and annotations of Apios americana and Apios priceana.

Hyun-Oh Lee, Hallie C Wright, Brandon D Jordan, Vikas Belamkar, Jugpreet Singh, Scott R Kalberer, Josh Clevenger, Steven B Cannon

Abstract readDataset
In one paragraph

Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hyun-Oh LeeORISE Fellow, USDA-ARS Corn Insects and Crop Genetics Research Unit, 819 Wallace Rd, Ames, Iowa, 50011, USA.ORCID http://orcid.org/0000-0001-8182-8763
Hallie C WrightHudsonAlpha Institute for Biotechnology, 601 Genome Way Northwest, Huntsville, Alabama, 35806, USA.
Brandon D JordanORISE Fellow, USDA-ARS Corn Insects and Crop Genetics Research Unit, 819 Wallace Rd, Ames, Iowa, 50011, USA.
Vikas BelamkarCorteva Agriscience, 4050 30th Ave S, Moorhead, Minnesota, 56560, USA.
Jugpreet SinghTropical Research and Education Center, University of Florida IFAS, Homestead, FL, 33031, USA.
Scott R KalbererUSDA - Agricultural Research Service, Corn Insects and Crop Genetics Research Unit, 819 Wallace Rd, Ames, Iowa, 50011, USA.
Josh ClevengerHudsonAlpha Institute for Biotechnology, 601 Genome Way Northwest, Huntsville, Alabama, 35806, USA.
Steven B CannonUSDA - Agricultural Research Service, Corn Insects and Crop Genetics Research Unit, 819 Wallace Rd, Ames, Iowa, 50011, USA. steven.cannon@usda.gov.ORCID http://orcid.org/0000-0003-2777-8034

Funding

United States Department of Agriculture | Agricultural Research Service (USDA Agricultural Research Service) 0201-88888-002-000DUnited States Department of Agriculture | Agricultural Research Service (USDA Agricultural Research Service) 0201-88888-003-000DUnited States Department of Agriculture | Agricultural Research Service (USDA Agricultural Research Service) 5030-21000-071-000D
6 · The paper itself

Abstract

Apios americana and Apios priceana are tuber-forming legumes native to North America with ecological value and agricultural potential. The lack of genomic resources has limited comparative studies and crop improvement for these species. Here, we report high-quality, haplotype-resolved, chromosome-level genome assemblies for both the species. The assemblies were generated from high-fidelity long-read data, and the primary assemblies were scaffolded using Omni-C chromatin conformation maps. The genome sizes of the primary haplotype assemblies were 1.53 Gb for A. americana and 1.85 Gb for A. priceana, each represented by 11 pseudochromosomes. The BUSCO completeness scores ranged from 98.6% to 99.0%. Approximately 26,000 predicted genes (30,000-33,000 predicted mRNA transcripts) were identified per haplotype in A. americana and A. priceana, respectively. Repeat annotation revealed that over 80% of both genomes consist of interspersed repetitive elements, with the most abundant being long terminal repeat (LTR) retrotransposons. These genomic resources will support trait mapping and structural variation analyses in Apios, and more broadly, comparative genomics within the legume family.

Indexed as

Chromosomes, PlantFabaceaeGenome, PlantHaplotypesMolecular Sequence Annotation

Identifiers

PMID41748593
PMCPMC13061880

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.