Evidence map›Paper›PMID 41743703›Full record

ArticleFrontiers in immunology2026

Multi-omics profiling of sodium-overload (NECSO) programs identifies NEK8 as a central driver of colorectal cancer progression through single-cell and spatial transcriptomics.

Yanchao Ji, Bo Yu, Xuedong Yin, Tianqi Yu, Xu Wu, Zongrui Zhao, Zheng Wang, Xiangjie Gao, Jiajun Zhao, Zhihao Fang and 2 more

Abstract read
In one paragraph

Article in Frontiers in immunology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yanchao Ji *Department of General Surgery, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Bo Yu *Department of General Surgery, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Xuedong YinDepartment of General Surgery, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Tianqi YuDepartment of General Surgery, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Xu WuDepartment of General Surgery, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Zongrui ZhaoDepartment of General Surgery, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Zheng WangDepartment of General Surgery, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Xiangjie GaoDepartment of General Surgery, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Jiajun ZhaoDepartment of General Surgery, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Zhihao FangDepartment of General Surgery, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Yaxuan WangDepartment of Urology, The First Affiliated Hospital of Harbin Medical University, Harbin, China.
Yingnan YuDepartment of General Surgery, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Colorectal cancer (CRC) is a leading cause of cancer-related death, often marked by intratumoral heterogeneity, immune evasion, and therapeutic resistance. Recent advancements in single-cell and spatial transcriptomics have enabled a deeper understanding of the tumor microenvironment (TME), revealing key insights into metabolic reprogramming and immune suppression. This study focuses on the role of sodium-overload cell death (NECSO) and its interaction with immune modulation in CRC pathogenesis. Methods: We employed an integrated multi-omic approach combining single-cell RNA-sequencing (scRNA-seq) and spatial transcriptomics (ST) to identify key NECSO-related genes in CRC. Through differential expression analysis and LASSO-Cox regression modeling, we developed a NECSO-based prognostic model. We validated our findings using TCGA and GEO datasets, assessing immune infiltration and spatial gene localization to determine the relationship between NEK8 and immune modulation. Results: Our NECSO-derived five-gene signature (NEK8, DRD4, EPHB2, CYTH2, ACOT11) effectively stratified CRC patients into high- and low-risk groups. High-risk patients exhibited reduced immune cell infiltration, particularly CD8 Conclusions: The NECSO-derived signature provides a novel prognostic tool that integrates immune evasion and metabolic reprogramming in CRC. NEK8 plays a pivotal role in shaping the immune landscape and could serve as a biomarker for immunotherapy response, offering a pathway for personalized treatment strategies in precision oncology.

Indexed as

Colorectal NeoplasmsNIMA-Related KinasesBiomarkers, TumorCell Line, TumorDisease ProgressionGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMultiomicsPrognosisSingle-Cell AnalysisSingle-Cell Gene Expression AnalysisSpatial TranscriptomicsTranscriptomeTumor MicroenvironmentBiomarkers, TumorNIMA-Related Kinasescolorectal cancerNEK8single-cell RNA-seqsodium-overload cell deathspatial transcriptomicTRPM4

Identifiers

PMID41743703
PMCPMC12929418

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.