Evidence map›Paper›PMID 41741356›Full record

ArticleAmerican journal of medical genetics. Part A2026

Novel Biallelic LIG3 Mutations Causing Lethal Phenotype With Immunodeficiency.

Gonench Kilich, Tanaya Jadhav, Kelly Maurer, Christopher Breen, Tejas Jammihal, Erica Schindewolf, Rebecca D Ganetzky, Adeline Vanderver, Cara Skraban, Ramakrishnan Rajagopalan and 1 more

Abstract readCase Reports
In one paragraph

Article in American journal of medical genetics. Part A, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Gonench KilichDivision of Allergy Immunology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Tanaya JadhavDivision of Genomic Diagnostics, Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Kelly MaurerDivision of Allergy Immunology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Christopher BreenDivision of Allergy Immunology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Tejas JammihalDivision of Genomic Diagnostics, Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Erica SchindewolfDivision of Allergy Immunology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Rebecca D GanetzkyDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Adeline VanderverDivision of Neurology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Cara SkrabanDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Ramakrishnan RajagopalanDivision of Genomic Diagnostics, Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Kathleen E SullivanDivision of Allergy Immunology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.

Funding

Undiagnosed diseases network clinical siteU01HG010219 · NHGRI · CHILDREN'S HOSP OF PHILADELPHIA · PI RADER, DANIEL JAMES, SULLIVAN, KATHLEEN E · 2018 to 2022
$3.0M
Utilizing long-read sequencing to resolve inconclusive diagnoses and uncertainty in genetic testingR01HG013355 · NHGRI · CHILDREN'S HOSP OF PHILADELPHIA · PI Ramakrishnan Rajagopalan · 2024 to 2026
$1.3M
Children's Hospital of PhiladelphiaNHGRI NIH HHS R01 HG013355NHGRI NIH HHS R01-HG013355NHGRI NIH HHS U01 HG010219Undiagnosed Diseases Network U01HG010219
6 · The paper itself

Abstract

Pathogenic, biallelic variants in LIG3 are known to cause Mitochondrial DNA Depletion syndrome 20 with variable expression and severity. We describe a child with progressive encephalopathy, cataracts, movement disorder, endocrine dysfunction, and immunodeficiency who remained undiagnosed despite multiple negative clinical genomic diagnostic studies. Research reanalysis of PacBio long-read genome sequencing data identified compound heterozygous LIG3 variants, including a splice variant and a novel 98 bp insertion. Western blot confirmed loss of LIG3 protein expression and RNA-seq demonstrated aberrant transcripts. Muscle biopsy revealed mitochondrial dysfunction, with COX-deficient fibers and complex IV deficiency. Notably, this is the first reported association of LIG3 deficiency with immunologic and endocrine abnormalities, emphasizing the importance of a broad approach to phenotype-genotype.

Indexed as

DNA Ligase ATPImmunologic Deficiency SyndromesMitochondrial DiseasesMutationAllelesDNA, MitochondrialGenetic Association StudiesHumansPhenotypeDNA Ligase ATPDNA, Mitochondrialgenome reanalysisimmunodeficiencyLIG3 genemitochondrial disease

Identifiers

PMID41741356
PMCPMC13135246

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.