Evidence map›Paper›PMID 41740147›Full record

ArticleJMIR research protocols2026

The Third Study of Infectious Intestinal Disease (IID3 Study) in the Community: Protocol for UK-Based Prospective Cohort Studies Investigating the Disease Burden.

Ben W Rowland, Vanashree Sexton, Aileen Mill, Stephen Rushton, Roy Sanderson, Caroline Grundy, Simon de Lusignan, Nigel A Cunliffe, Daniel Hungerford, Mark Hopkins and 10 more

Abstract read
In one paragraph

Article in JMIR research protocols, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Ben W Rowland *School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, England, United Kingdom.ORCID https://orcid.org/0000-0001-8810-7870
Vanashree Sexton *Clinical Informatics and Health Outcomes Research Group, Nuffield Department of Primary Care Health Science, University of Oxford, Oxford, England, United Kingdom.ORCID https://orcid.org/0000-0002-6935-016X
Aileen MillSchool of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, England, United Kingdom.ORCID https://orcid.org/0000-0002-7400-6064
Stephen RushtonSchool of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, England, United Kingdom.ORCID https://orcid.org/0000-0001-8443-5228
Roy SandersonSchool of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, England, United Kingdom.ORCID https://orcid.org/0000-0002-9580-4751
Caroline GrundySchool of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, England, United Kingdom.ORCID https://orcid.org/0009-0003-2626-0302
Simon de LusignanClinical Informatics and Health Outcomes Research Group, Nuffield Department of Primary Care Health Science, University of Oxford, Oxford, England, United Kingdom.ORCID https://orcid.org/0000-0002-8553-2641
Nigel A CunliffeDepartment of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, England, United Kingdom.ORCID https://orcid.org/0000-0002-5449-4988
Daniel HungerfordDepartment of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, England, United Kingdom.ORCID https://orcid.org/0000-0002-9770-0163
Mark HopkinsLiverpool Clinical Laboratories, Liverpool University Hospitals NHS Trust, Liverpool, England, United Kingdom.ORCID https://orcid.org/0000-0003-4744-8542
Saheer GharbiaWellcome Sanger Institute, Hinxton, England, United Kingdom.ORCID https://orcid.org/0000-0003-0206-051X
Claire JenkinsUK Health Security Agency, London, England, United Kingdom.ORCID https://orcid.org/0000-0001-8600-9169
Gauri GodboleUK Health Security Agency, London, England, United Kingdom.ORCID https://orcid.org/0000-0002-5846-8517
Roberto VivancosUK Health Security Agency, London, England, United Kingdom.ORCID https://orcid.org/0000-0002-8203-8867
Alex J ElliotUK Health Security Agency, London, England, United Kingdom.ORCID https://orcid.org/0000-0002-6414-3065
Dominic J MellorPublic Health Scotland, Edinburgh, Scotland, United Kingdom.ORCID https://orcid.org/0000-0001-7141-652X
Lesley LarkinPublic Health Scotland, Edinburgh, Scotland, United Kingdom.ORCID https://orcid.org/0000-0003-3699-9699
Rachel ChalmersSwansea University, Swansea, Wales, United Kingdom.ORCID https://orcid.org/0000-0002-9309-7096
Sarah O'BrienSchool of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, England, United Kingdom.ORCID https://orcid.org/0000-0003-2896-8999
IID3 Consortium *See Acknowledgements, .

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThere is a significant hidden burden of infectious intestinal disease (IID) in the UK community, which has increased over time. In the late 2000s, the Second Study of Infectious Intestinal Disease (IID2 study) estimated 17 million IID cases annually in the United Kingdom. However, only a small proportion of cases present to health care, and even those are often not tested for causative organisms.

objectiveThe Third Study of Infectious Intestinal Disease (IID3 study) aims to determine the IID burden in the UK community, estimate the underreporting level in routine practice and the general population, and recalibrate UK national surveillance based on the new incidence rates.

methodsWe will follow methods of previous studies, along with modern pathogen detection methods and digital platforms for recruitment and follow-up. Participants will be recruited to three population-based prospective cohorts: cohort 1 (the general population), cohort 2 (patients with IID presenting to general practices [GPs]), and cohort 3 (enumeration study of IID cases presenting to GPs). Microbiological analysis of stool samples in cohorts 1 and 2 will include testing for a wide range of causative organisms using molecular assays, including pathogen targets not routinely sought by National Health Service (NHS) laboratories. Additional characterization of pathogens will be conducted at national reference laboratories. The incidence rates of IID and organisms detected in cohorts 1-3 will be compared to national surveillance systems, both laboratory and syndromic. Descriptive statistics and analysis will allow comparison of IID rates within each cohort, estimate the overall burden of disease caused by different pathogens, and compare findings to earlier IID studies.

resultsA favorable ethical opinion was obtained from the UK Health Research Authority on August 4, 2022. A pilot phase to test the sampling process was conducted from January to August 2023. Participant recruitment commenced on September 1, 2023, for cohort 2 and on March 16, 2024, for cohort 1; recruitment ceased on August 31, 2025. Data collection is complete, and data analysis is to begin. The study is expected to end in September 2026.

conclusionsSince the first and second IID studies, changes have occurred within national surveillance systems, the NHS structure, and public recommendations about when to consult a GP and where to seek health care advice, which may have altered the extent of IID reporting and the perceived burden in the community, creating greater uncertainty about the representativeness of IID rates. The IID3 study results will provide insight into trends in disease incidence over time and help quantify inequalities in IID in the UK community. Revised estimates can inform policy related to prevention, including food standards and disease management. Furthermore, advances in molecular diagnostics will significantly enhance pathogen detection, increasing our understanding of the causes of IID. INTERNATIONAL REGISTERED REPORT IDENTIFIER (IRRID): DERR1-10.2196/88759.

Indexed as

cohortgeneral practitionerIIDinfectious intestinal diseasepathogensample

Identifiers

PMID41740147
PMCPMC12980067

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